miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 99680 0.88 0.274324
Target:  5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99640 0.66 0.999233
Target:  5'- uGCGUC---AGCGCcgacccUGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99614 0.84 0.461408
Target:  5'- gCACGUCUAaaaaUAaCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAU----AUcGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99550 0.69 0.993342
Target:  5'- gCAUGUUUAaaaaaCACUCGUUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAUauc--GUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99516 0.72 0.959293
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99443 0.81 0.587573
Target:  5'- gCACGUCUAaaaaUAGCACaUGCUUUUCGAc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGaGCGAAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 99321 0.7 0.980672
Target:  5'- aGCGgggUUAaauGUACUCGUUUUUCGAGa -3'
miRNA:   3'- gUGCa--GAUau-CGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99274 0.92 0.161709
Target:  5'- gCACGUauaagAUAGCGCUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAga---UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 91345 0.68 0.99511
Target:  5'- aCGCGUCUGUGG-AgaCGCUgUUCGAc -3'
miRNA:   3'- -GUGCAGAUAUCgUgaGCGAaAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 80822 0.67 0.998582
Target:  5'- aCGCGUgcCUuaaagaGUGGCACaCGCUgUUCGAGu -3'
miRNA:   3'- -GUGCA--GA------UAUCGUGaGCGAaAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 68245 0.72 0.95527
Target:  5'- uGCGUCgcUGGCGCUCggGCUgUUCGAa -3'
miRNA:   3'- gUGCAGauAUCGUGAG--CGAaAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 67011 0.86 0.351004
Target:  5'- gACGcCUAaagaUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCaGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66946 0.8 0.664377
Target:  5'- gCACGUaagAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- -GUGCAga-UAUCGUGAGCGAAAAGCuc -5'
21269 3' -47.5 NC_004778.3 + 66883 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66817 0.94 0.126105
Target:  5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3'
miRNA:   3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66751 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66687 0.75 0.862574
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66686 0.88 0.288514
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCa-- -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 66621 1 0.055089
Target:  5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66621 0.75 0.862574
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.