Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21269 | 3' | -47.5 | NC_004778.3 | + | 123132 | 0.68 | 0.996476 |
Target: 5'- uGCGUC---GGCGCcaacccCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 42798 | 0.68 | 0.996476 |
Target: 5'- aGCGUCUu--GCACUCGUgcaccgUCGGc -3' miRNA: 3'- gUGCAGAuauCGUGAGCGaaa---AGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 5738 | 0.7 | 0.986651 |
Target: 5'- gACGg--GUGGCGCUCGUcUUUCGGa -3' miRNA: 3'- gUGCagaUAUCGUGAGCGaAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99516 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24028 | 0.72 | 0.95527 |
Target: 5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24226 | 0.72 | 0.95527 |
Target: 5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 68245 | 0.72 | 0.95527 |
Target: 5'- uGCGUCgcUGGCGCUCggGCUgUUCGAa -3' miRNA: 3'- gUGCAGauAUCGUGAG--CGAaAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 31580 | 0.77 | 0.780555 |
Target: 5'- uGCGUCUAUaaAGCGCUCGCUaugUUUCa-- -3' miRNA: 3'- gUGCAGAUA--UCGUGAGCGA---AAAGcuc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122439 | 0.78 | 0.729143 |
Target: 5'- gCACGUCUAaagaUAGCACUUGUUUUUCa-- -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66946 | 0.8 | 0.664377 |
Target: 5'- gCACGUaagAUAGCACUCGUUUUUCGc- -3' miRNA: 3'- -GUGCAga-UAUCGUGAGCGAAAAGCuc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24094 | 0.66 | 0.999609 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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