Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21269 | 3' | -47.5 | NC_004778.3 | + | 123132 | 0.68 | 0.996476 |
Target: 5'- uGCGUC---GGCGCcaacccCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66751 | 1 | 0.055089 |
Target: 5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 125062 | 0.83 | 0.481548 |
Target: 5'- gCAUGUCUGaGGUACUCGUUUUUCGAa -3' miRNA: 3'- -GUGCAGAUaUCGUGAGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 80822 | 0.67 | 0.998582 |
Target: 5'- aCGCGUgcCUuaaagaGUGGCACaCGCUgUUCGAGu -3' miRNA: 3'- -GUGCA--GA------UAUCGUGaGCGAaAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66817 | 0.94 | 0.126105 |
Target: 5'- gCACGUCcaaagAUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGa----UAUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122795 | 1.05 | 0.029801 |
Target: 5'- gCACGUUUAUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -GUGCAGAUAUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66621 | 1 | 0.055089 |
Target: 5'- gCACGUCUAaagaUAGCACUCGCUUUUCGAGa -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99640 | 0.66 | 0.999233 |
Target: 5'- uGCGUC---AGCGCcgacccUGCUUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24292 | 0.66 | 0.999609 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 42798 | 0.68 | 0.996476 |
Target: 5'- aGCGUCUu--GCACUCGUgcaccgUCGGc -3' miRNA: 3'- gUGCAGAuauCGUGAGCGaaa---AGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 31580 | 0.77 | 0.780555 |
Target: 5'- uGCGUCUAUaaAGCGCUCGCUaugUUUCa-- -3' miRNA: 3'- gUGCAGAUA--UCGUGAGCGA---AAAGcuc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99614 | 0.84 | 0.461408 |
Target: 5'- gCACGUCUAaaaaUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUcGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19967 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19747 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122665 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122555 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122406 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24029 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24227 | 0.8 | 0.653414 |
Target: 5'- gCAUGUCUcaaauUAGUACUCGCUUUaCGAGa -3' miRNA: 3'- -GUGCAGAu----AUCGUGAGCGAAAaGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19812 | 0.75 | 0.862574 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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