miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 68245 0.72 0.95527
Target:  5'- uGCGUCgcUGGCGCUCggGCUgUUCGAa -3'
miRNA:   3'- gUGCAGauAUCGUGAG--CGAaAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 24226 0.72 0.95527
Target:  5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24028 0.72 0.95527
Target:  5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122406 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122665 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122555 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122308 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19681 0.72 0.950986
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 20033 0.73 0.925511
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66424 0.74 0.900192
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 23963 0.75 0.878386
Target:  5'- gCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 24161 0.75 0.878386
Target:  5'- gCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 24360 0.75 0.870603
Target:  5'- cCAUGUCUAaaaaUAGCACUCGUUUUaCGGc -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAaGCUc -5'
21269 3' -47.5 NC_004778.3 + 66621 0.75 0.862574
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66687 0.75 0.862574
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19812 0.75 0.862574
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19912 0.75 0.862574
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGAGa -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 31580 0.77 0.780555
Target:  5'- uGCGUCUAUaaAGCGCUCGCUaugUUUCa-- -3'
miRNA:   3'- gUGCAGAUA--UCGUGAGCGA---AAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 122439 0.78 0.729143
Target:  5'- gCACGUCUAaagaUAGCACUUGUUUUUCa-- -3'
miRNA:   3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5'
21269 3' -47.5 NC_004778.3 + 66946 0.8 0.664377
Target:  5'- gCACGUaagAUAGCACUCGUUUUUCGc- -3'
miRNA:   3'- -GUGCAga-UAUCGUGAGCGAAAAGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.