miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 5' -56 NC_004778.3 + 19968 0.96 0.016827
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 125089 0.88 0.057207
Target:  5'- gUACUC-AAAAGCGGGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGcUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 20068 0.88 0.058799
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 122467 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 20190 0.93 0.025605
Target:  5'- -uCCCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 122305 0.88 0.063836
Target:  5'- gUACuuGAAAAGCaAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGggCUUUUCGcUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 66714 1.07 0.003105
Target:  5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 122342 0.87 0.07317
Target:  5'- gUACUCGAAAAGCaAGGUCGGCGCUGc -3'
miRNA:   3'- -AUGGGCUUUUCGcUCCAGCCGCGACu -5'
21269 5' -56 NC_004778.3 + 19839 1.03 0.006112
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACu -5'
21269 5' -56 NC_004778.3 + 122565 1.07 0.003105
Target:  5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 66909 0.85 0.09852
Target:  5'- -uCUCGAAAAGUGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 122401 0.91 0.039964
Target:  5'- gUACUCGAAAAGCGAGGUCGGCGCc-- -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGacu -5'
21269 5' -56 NC_004778.3 + 122779 0.88 0.057207
Target:  5'- cGCUuuucgaGAAAAGCGAGGUCGGCGCUGAc -3'
miRNA:   3'- aUGGg-----CUUUUCGCUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 66843 0.88 0.058799
Target:  5'- -uCUCGAAAAGCGAGGUCGGCGCcGAc -3'
miRNA:   3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 122890 0.85 0.09852
Target:  5'- gUACuuGGAAAGCGGGGUCGGCGCc-- -3'
miRNA:   3'- -AUGggCUUUUCGCUCCAGCCGCGacu -5'
21269 5' -56 NC_004778.3 + 122772 0.85 0.095909
Target:  5'- gUACUCGAAAAGUGGaGUCGGCGCUGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUcCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 122973 0.93 0.025605
Target:  5'- gUACCCGAAAAGCGGGGUUGGCGCcGAc -3'
miRNA:   3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5'
21269 5' -56 NC_004778.3 + 99654 0.73 0.460007
Target:  5'- -uCUCaAAAAGCaGGGUCGGCGCUGGc -3'
miRNA:   3'- auGGGcUUUUCGcUCCAGCCGCGACU- -5'
21269 5' -56 NC_004778.3 + 85754 0.7 0.662069
Target:  5'- aGCCCGAucacGAGCGGGaacgaaagcGUCGGCGUgaaGAa -3'
miRNA:   3'- aUGGGCUu---UUCGCUC---------CAGCCGCGa--CU- -5'
21269 5' -56 NC_004778.3 + 60948 0.7 0.672424
Target:  5'- aACUCuu-GAGCGuGGUCGGCGCa-- -3'
miRNA:   3'- aUGGGcuuUUCGCuCCAGCCGCGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.