Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21270 | 3' | -46.3 | NC_004778.3 | + | 19717 | 0.85 | 0.471702 |
Target: 5'- uUCUCGAAAAGCGAGUGCUaucuUUAGACGu -3' miRNA: 3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 19969 | 0.68 | 0.998746 |
Target: 5'- uUCUCGAAAAGCGAG-GUCggcgCuGACGc -3' miRNA: 3'- -AGAGCUUUUUGCUUaCGGa---GuCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 20006 | 0.7 | 0.994758 |
Target: 5'- --cCGAAAAGCGAGUGCUaucuUUGGACGu -3' miRNA: 3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 20069 | 0.69 | 0.996809 |
Target: 5'- uUCUCGAAAAGCGAGgucggcGCCgacgcacguaAGAUAGc -3' miRNA: 3'- -AGAGCUUUUUGCUUa-----CGGag--------UCUGUC- -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 24058 | 0.74 | 0.943611 |
Target: 5'- uUCUCGuAAAGCGAAUGCCaauuUgAGACGu -3' miRNA: 3'- -AGAGCuUUUUGCUUACGG----AgUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 24256 | 0.74 | 0.943611 |
Target: 5'- uUCUCGuAAAGCGAAUGCCaauuUgAGACGu -3' miRNA: 3'- -AGAGCuUUUUGCUUACGG----AgUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 24455 | 0.74 | 0.943611 |
Target: 5'- uUCUCGuAAAGCGAAUGCCaauuUgAGACGu -3' miRNA: 3'- -AGAGCuUUUUGCUUACGG----AgUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66460 | 0.85 | 0.471702 |
Target: 5'- uUCUCGAAAAGCGAGUGCUaucuUUAGACGu -3' miRNA: 3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66525 | 0.75 | 0.927714 |
Target: 5'- uUUUUGAAAAGCGAGUGCUaucuUUAGACGu -3' miRNA: 3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66581 | 0.66 | 0.99988 |
Target: 5'- aCUCGAAAAGCGAG-GUCggcgCuGACGc -3' miRNA: 3'- aGAGCUUUUUGCUUaCGGa---GuCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66591 | 0.85 | 0.471702 |
Target: 5'- uUCUCGAAAAGCGAGUGCUaucuUUAGACGu -3' miRNA: 3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66660 | 0.7 | 0.994758 |
Target: 5'- --cCGAAAAGCGAGUGCUaucuUUGGACGu -3' miRNA: 3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66726 | 0.7 | 0.994758 |
Target: 5'- --cCGAAAAGCGAGUGCUaucuUUGGACGu -3' miRNA: 3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66778 | 0.68 | 0.998746 |
Target: 5'- uUCUCGAAAAGCGAG-GUCggcgCuGACGc -3' miRNA: 3'- -AGAGCUUUUUGCUUaCGGa---GuCUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 66844 | 0.68 | 0.99939 |
Target: 5'- uUCUCGAAAAGCGAGgucggcGCCgacgcacguccaaAGAUAGc -3' miRNA: 3'- -AGAGCUUUUUGCUUa-----CGGag-----------UCUGUC- -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 69788 | 0.7 | 0.994758 |
Target: 5'- --cCGAGAGGCGGccGUGCCUCGcGACc- -3' miRNA: 3'- agaGCUUUUUGCU--UACGGAGU-CUGuc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 85638 | 0.66 | 0.999909 |
Target: 5'- gCUUG-GAAACGAGUcGUCUCAaGACAa -3' miRNA: 3'- aGAGCuUUUUGCUUA-CGGAGU-CUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 99417 | 0.72 | 0.983868 |
Target: 5'- aCUCGGAAAGCGAGgucgGCgCUCAcGCAc -3' miRNA: 3'- aGAGCUUUUUGCUUa---CG-GAGUcUGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 99434 | 0.73 | 0.959818 |
Target: 5'- uUCUCGAAAAGCGAgcgcuaucuuauacGUGCgUCAGcGCGa -3' miRNA: 3'- -AGAGCUUUUUGCU--------------UACGgAGUC-UGUc -5' |
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21270 | 3' | -46.3 | NC_004778.3 | + | 99480 | 0.7 | 0.992875 |
Target: 5'- uUCUCGAAAAACGAGUacauuuaaccccGCUUUuaGGGCAc -3' miRNA: 3'- -AGAGCUUUUUGCUUA------------CGGAG--UCUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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