miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21270 3' -46.3 NC_004778.3 + 24455 0.74 0.943611
Target:  5'- uUCUCGuAAAGCGAAUGCCaauuUgAGACGu -3'
miRNA:   3'- -AGAGCuUUUUGCUUACGG----AgUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 100101 0.74 0.943611
Target:  5'- --cCGAAAAGCGAGUGCUauuuUUAGACAu -3'
miRNA:   3'- agaGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 66525 0.75 0.927714
Target:  5'- uUUUUGAAAAGCGAGUGCUaucuUUAGACGu -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 122639 0.76 0.902609
Target:  5'- uUCUCGAAAAGCGAGUGCUauaaacgugcgUCAG-CGc -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGG-----------AGUCuGUc -5'
21270 3' -46.3 NC_004778.3 + 19717 0.85 0.471702
Target:  5'- uUCUCGAAAAGCGAGUGCUaucuUUAGACGu -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 66591 0.85 0.471702
Target:  5'- uUCUCGAAAAGCGAGUGCUaucuUUAGACGu -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 66460 0.85 0.471702
Target:  5'- uUCUCGAAAAGCGAGUGCUaucuUUAGACGu -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGG----AGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 122529 0.86 0.412941
Target:  5'- uUCUCGAAAAGCGAGUGCUaUAGACGu -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGGaGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 122591 0.86 0.412941
Target:  5'- uUCUCGAAAAGCGAGUGCUaUAGACGu -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGGaGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 124783 0.86 0.412941
Target:  5'- uUUUCGAAAAACGAGUaCCUCAGACAu -3'
miRNA:   3'- -AGAGCUUUUUGCUUAcGGAGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 124905 0.86 0.412941
Target:  5'- uUUUCGAAAAACGAGUaCCUCAGACAu -3'
miRNA:   3'- -AGAGCUUUUUGCUUAcGGAGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 124844 0.95 0.139626
Target:  5'- uUC-CGAAAAACGAAUGCCUCAGACAu -3'
miRNA:   3'- -AGaGCUUUUUGCUUACGGAGUCUGUc -5'
21270 3' -46.3 NC_004778.3 + 122895 1.12 0.014693
Target:  5'- uUCUCGAAAAACGAAUGCCUCAGACAGg -3'
miRNA:   3'- -AGAGCUUUUUGCUUACGGAGUCUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.