Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21270 | 5' | -40.3 | NC_004778.3 | + | 122858 | 1.13 | 0.059208 |
Target: 5'- aGUCUAAAGAUAGCACUUGUUUUUCGAg -3' miRNA: 3'- -CAGAUUUCUAUCGUGAACAAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 122436 | 1.04 | 0.169522 |
Target: 5'- cGUCUAAAGAUAGCACUUGUUUUUCa- -3' miRNA: 3'- -CAGAUUUCUAUCGUGAACAAAAAGcu -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 19938 | 0.99 | 0.295927 |
Target: 5'- -gUUAAAGAUAGCACUUGUUUUUCGAu -3' miRNA: 3'- caGAUUUCUAUCGUGAACAAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 66748 | 0.92 | 0.563082 |
Target: 5'- cGUCUAAAGAUAGCACUcGcUUUUCGAg -3' miRNA: 3'- -CAGAUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 66618 | 0.92 | 0.563082 |
Target: 5'- cGUCUAAAGAUAGCACUcGcUUUUCGAg -3' miRNA: 3'- -CAGAUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 19874 | 0.92 | 0.563082 |
Target: 5'- cGUCUAAAGAUAGCACUcGcUUUUCGAg -3' miRNA: 3'- -CAGAUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 20005 | 0.84 | 0.919543 |
Target: 5'- cGUUUAAAGAUAGCACUcGcUUUUCGGg -3' miRNA: 3'- -CAGAUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 66683 | 0.83 | 0.925834 |
Target: 5'- cGUCUAAAGAUAGCACUcGcUUUUCa- -3' miRNA: 3'- -CAGAUUUCUAUCGUGAaCaAAAAGcu -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 67007 | 0.81 | 0.965093 |
Target: 5'- -cCUAAAGAUAGCACUcGcUUUUCGGg -3' miRNA: 3'- caGAUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 20161 | 0.79 | 0.990059 |
Target: 5'- cGUCcAAAGAUAGCACUcGcUUUUCGGg -3' miRNA: 3'- -CAGaUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 66814 | 0.79 | 0.990059 |
Target: 5'- cGUCcAAAGAUAGCACUcGcUUUUCGGg -3' miRNA: 3'- -CAGaUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 66880 | 0.79 | 0.990059 |
Target: 5'- cGUCcAAAGAUAGCACUcGcUUUUCGGg -3' miRNA: 3'- -CAGaUUUCUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 99388 | 0.78 | 0.992656 |
Target: 5'- cGUCUAAAGAUAaC-CUUGUUUUUCGu -3' miRNA: 3'- -CAGAUUUCUAUcGuGAACAAAAAGCu -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 122377 | 0.77 | 0.996229 |
Target: 5'- cGUCUAAAGAUAaCACUaGUUUUUCa- -3' miRNA: 3'- -CAGAUUUCUAUcGUGAaCAAAAAGcu -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 99446 | 0.76 | 0.998559 |
Target: 5'- cGUCUAAAaAUAGCACaUGcUUUUCGAc -3' miRNA: 3'- -CAGAUUUcUAUCGUGaACaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 66941 | 0.74 | 0.999835 |
Target: 5'- ----uAAGAUAGCACUcGUUUUUCGc -3' miRNA: 3'- cagauUUCUAUCGUGAaCAAAAAGCu -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 99946 | 0.74 | 0.999835 |
Target: 5'- uGUCUAAAaAUAGCACUcGcUUUUCGGg -3' miRNA: 3'- -CAGAUUUcUAUCGUGAaCaAAAAGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 24363 | 0.73 | 0.999963 |
Target: 5'- uGUCUAAAaAUAGCACUcGUUUUaCGGc -3' miRNA: 3'- -CAGAUUUcUAUCGUGAaCAAAAaGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 24164 | 0.73 | 0.999963 |
Target: 5'- uGUCUAAAaAUAGCACUcGUUUUaCGGc -3' miRNA: 3'- -CAGAUUUcUAUCGUGAaCAAAAaGCU- -5' |
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21270 | 5' | -40.3 | NC_004778.3 | + | 23966 | 0.73 | 0.999963 |
Target: 5'- uGUCUAAAaAUAGCACUcGUUUUaCGGc -3' miRNA: 3'- -CAGAUUUcUAUCGUGAaCAAAAaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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