miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21271 3' -58.7 NC_004778.3 + 65757 0.68 0.599211
Target:  5'- uGGCGCAGCGa-GCCGGgcGGUGa-CGGCg -3'
miRNA:   3'- -UCGCGUCGCacCGGCU--UCACgaGCUG- -5'
21271 3' -58.7 NC_004778.3 + 2393 0.67 0.650418
Target:  5'- cGCGCGGU--GGCCGAcGUGCccgcgccCGACg -3'
miRNA:   3'- uCGCGUCGcaCCGGCUuCACGa------GCUG- -5'
21271 3' -58.7 NC_004778.3 + 95937 0.71 0.452259
Target:  5'- aGGCGCAGCGcGGCCGgcGcGCUgCcGCg -3'
miRNA:   3'- -UCGCGUCGCaCCGGCuuCaCGA-GcUG- -5'
21271 3' -58.7 NC_004778.3 + 57906 0.69 0.5486
Target:  5'- uGGCGCGGCG-GGCguCGAccuuguccauGGUcGUUCGACa -3'
miRNA:   3'- -UCGCGUCGCaCCG--GCU----------UCA-CGAGCUG- -5'
21271 3' -58.7 NC_004778.3 + 36500 0.69 0.5486
Target:  5'- gAGUGCAGCGU-GCCGu--UGCgCGACa -3'
miRNA:   3'- -UCGCGUCGCAcCGGCuucACGaGCUG- -5'
21271 3' -58.7 NC_004778.3 + 62635 0.69 0.568717
Target:  5'- uGCGCcagaacAGCGUGGUCGAGGcGgUCGGu -3'
miRNA:   3'- uCGCG------UCGCACCGGCUUCaCgAGCUg -5'
21271 3' -58.7 NC_004778.3 + 61795 0.68 0.629923
Target:  5'- cGCGCGGCGuUGGCgCGcgcuGGcUGCgCGGCg -3'
miRNA:   3'- uCGCGUCGC-ACCG-GCu---UC-ACGaGCUG- -5'
21271 3' -58.7 NC_004778.3 + 2346 0.67 0.681031
Target:  5'- cGCGaCAG-GUGGCCaauGUGCgCGACa -3'
miRNA:   3'- uCGC-GUCgCACCGGcuuCACGaGCUG- -5'
21271 3' -58.7 NC_004778.3 + 121656 0.67 0.701251
Target:  5'- uAGCGCGGCGacGCU--AGUGCagGACa -3'
miRNA:   3'- -UCGCGUCGCacCGGcuUCACGagCUG- -5'
21271 3' -58.7 NC_004778.3 + 1829 0.66 0.750621
Target:  5'- cGCGCuGC-UGGCCGcacccaaaccgaAGGUGCcaaCGACg -3'
miRNA:   3'- uCGCGuCGcACCGGC------------UUCACGa--GCUG- -5'
21271 3' -58.7 NC_004778.3 + 127084 1.09 0.001204
Target:  5'- gAGCGCAGCGUGGCCGAAGUGCUCGACu -3'
miRNA:   3'- -UCGCGUCGCACCGGCUUCACGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.