Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21271 | 3' | -58.7 | NC_004778.3 | + | 127084 | 1.09 | 0.001204 |
Target: 5'- gAGCGCAGCGUGGCCGAAGUGCUCGACu -3' miRNA: 3'- -UCGCGUCGCACCGGCUUCACGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 42501 | 0.83 | 0.084242 |
Target: 5'- gAGgGCGGCGUGGUCGgcGUGCcCGACa -3' miRNA: 3'- -UCgCGUCGCACCGGCuuCACGaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 29333 | 0.76 | 0.218677 |
Target: 5'- uGGCGCGGCGcGcGCUGggGUGCgccaagCGGCu -3' miRNA: 3'- -UCGCGUCGCaC-CGGCuuCACGa-----GCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 33760 | 0.75 | 0.246978 |
Target: 5'- uGGCGCGGCacUGGCauCGAguGGUGCUCGAUg -3' miRNA: 3'- -UCGCGUCGc-ACCG--GCU--UCACGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 81749 | 0.72 | 0.419866 |
Target: 5'- cGGCGCGGCGggUGGCgGAccgacugcgccgguaGGUGCgCGGCc -3' miRNA: 3'- -UCGCGUCGC--ACCGgCU---------------UCACGaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 95937 | 0.71 | 0.452259 |
Target: 5'- aGGCGCAGCGcGGCCGgcGcGCUgCcGCg -3' miRNA: 3'- -UCGCGUCGCaCCGGCuuCaCGA-GcUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 64161 | 0.7 | 0.480267 |
Target: 5'- cGCGCc-CGUGGCCGccGaGCUUGACg -3' miRNA: 3'- uCGCGucGCACCGGCuuCaCGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 34397 | 0.7 | 0.480267 |
Target: 5'- -uUGCAGCucGUGGCCGGGcUGCUcCGGCa -3' miRNA: 3'- ucGCGUCG--CACCGGCUUcACGA-GCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 36500 | 0.69 | 0.5486 |
Target: 5'- gAGUGCAGCGU-GCCGu--UGCgCGACa -3' miRNA: 3'- -UCGCGUCGCAcCGGCuucACGaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 57906 | 0.69 | 0.5486 |
Target: 5'- uGGCGCGGCG-GGCguCGAccuuguccauGGUcGUUCGACa -3' miRNA: 3'- -UCGCGUCGCaCCG--GCU----------UCA-CGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 57121 | 0.69 | 0.565687 |
Target: 5'- cGGCGguGCuG-GGCCccgacggaacgggaGAcGUGCUCGACa -3' miRNA: 3'- -UCGCguCG-CaCCGG--------------CUuCACGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 118781 | 0.69 | 0.565687 |
Target: 5'- gGGCGCGGCGcGGCCGGcgcgcacaauuacgAG-GCccagCGGCg -3' miRNA: 3'- -UCGCGUCGCaCCGGCU--------------UCaCGa---GCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 62635 | 0.69 | 0.568717 |
Target: 5'- uGCGCcagaacAGCGUGGUCGAGGcGgUCGGu -3' miRNA: 3'- uCGCG------UCGCACCGGCUUCaCgAGCUg -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 65757 | 0.68 | 0.599211 |
Target: 5'- uGGCGCAGCGa-GCCGGgcGGUGa-CGGCg -3' miRNA: 3'- -UCGCGUCGCacCGGCU--UCACgaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 61795 | 0.68 | 0.629923 |
Target: 5'- cGCGCGGCGuUGGCgCGcgcuGGcUGCgCGGCg -3' miRNA: 3'- uCGCGUCGC-ACCG-GCu---UC-ACGaGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 2393 | 0.67 | 0.650418 |
Target: 5'- cGCGCGGU--GGCCGAcGUGCccgcgccCGACg -3' miRNA: 3'- uCGCGUCGcaCCGGCUuCACGa------GCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 34310 | 0.67 | 0.669836 |
Target: 5'- aAGUGcCGGCGcGuGCUGGAacuggugcagggcGUGCUCGACa -3' miRNA: 3'- -UCGC-GUCGCaC-CGGCUU-------------CACGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 71510 | 0.67 | 0.670856 |
Target: 5'- cGGCGgaGGCGuUGGCCaGGGUG-UCGGCg -3' miRNA: 3'- -UCGCg-UCGC-ACCGGcUUCACgAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 92861 | 0.67 | 0.670856 |
Target: 5'- cGUGCAcGCuucGGCCGAGaacgGCUCGGCg -3' miRNA: 3'- uCGCGU-CGca-CCGGCUUca--CGAGCUG- -5' |
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21271 | 3' | -58.7 | NC_004778.3 | + | 61027 | 0.67 | 0.677982 |
Target: 5'- cGUGCAGCGUuggcGGUCGGuagccaaaucaaacAcGUGCUCGAa -3' miRNA: 3'- uCGCGUCGCA----CCGGCU--------------U-CACGAGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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