miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21271 3' -58.7 NC_004778.3 + 118781 0.69 0.565687
Target:  5'- gGGCGCGGCGcGGCCGGcgcgcacaauuacgAG-GCccagCGGCg -3'
miRNA:   3'- -UCGCGUCGCaCCGGCU--------------UCaCGa---GCUG- -5'
21271 3' -58.7 NC_004778.3 + 36500 0.69 0.5486
Target:  5'- gAGUGCAGCGU-GCCGu--UGCgCGACa -3'
miRNA:   3'- -UCGCGUCGCAcCGGCuucACGaGCUG- -5'
21271 3' -58.7 NC_004778.3 + 57906 0.69 0.5486
Target:  5'- uGGCGCGGCG-GGCguCGAccuuguccauGGUcGUUCGACa -3'
miRNA:   3'- -UCGCGUCGCaCCG--GCU----------UCA-CGAGCUG- -5'
21271 3' -58.7 NC_004778.3 + 34397 0.7 0.480267
Target:  5'- -uUGCAGCucGUGGCCGGGcUGCUcCGGCa -3'
miRNA:   3'- ucGCGUCG--CACCGGCUUcACGA-GCUG- -5'
21271 3' -58.7 NC_004778.3 + 64161 0.7 0.480267
Target:  5'- cGCGCc-CGUGGCCGccGaGCUUGACg -3'
miRNA:   3'- uCGCGucGCACCGGCuuCaCGAGCUG- -5'
21271 3' -58.7 NC_004778.3 + 95937 0.71 0.452259
Target:  5'- aGGCGCAGCGcGGCCGgcGcGCUgCcGCg -3'
miRNA:   3'- -UCGCGUCGCaCCGGCuuCaCGA-GcUG- -5'
21271 3' -58.7 NC_004778.3 + 81749 0.72 0.419866
Target:  5'- cGGCGCGGCGggUGGCgGAccgacugcgccgguaGGUGCgCGGCc -3'
miRNA:   3'- -UCGCGUCGC--ACCGgCU---------------UCACGaGCUG- -5'
21271 3' -58.7 NC_004778.3 + 33760 0.75 0.246978
Target:  5'- uGGCGCGGCacUGGCauCGAguGGUGCUCGAUg -3'
miRNA:   3'- -UCGCGUCGc-ACCG--GCU--UCACGAGCUG- -5'
21271 3' -58.7 NC_004778.3 + 29333 0.76 0.218677
Target:  5'- uGGCGCGGCGcGcGCUGggGUGCgccaagCGGCu -3'
miRNA:   3'- -UCGCGUCGCaC-CGGCuuCACGa-----GCUG- -5'
21271 3' -58.7 NC_004778.3 + 42501 0.83 0.084242
Target:  5'- gAGgGCGGCGUGGUCGgcGUGCcCGACa -3'
miRNA:   3'- -UCgCGUCGCACCGGCuuCACGaGCUG- -5'
21271 3' -58.7 NC_004778.3 + 127084 1.09 0.001204
Target:  5'- gAGCGCAGCGUGGCCGAAGUGCUCGACu -3'
miRNA:   3'- -UCGCGUCGCACCGGCUUCACGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.