miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21271 5' -50.2 NC_004778.3 + 127041 1.1 0.00798
Target:  5'- gCCGCCAGCAGUACAACGACAUUACCUu -3'
miRNA:   3'- -GGCGGUCGUCAUGUUGCUGUAAUGGA- -5'
21271 5' -50.2 NC_004778.3 + 20238 0.86 0.239893
Target:  5'- cCUGCCGGCAGUugGACcACGUUACCg -3'
miRNA:   3'- -GGCGGUCGUCAugUUGcUGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 14802 0.83 0.33822
Target:  5'- cCCGCguGCAGUACGACGACAcgcgcggcUUACUg -3'
miRNA:   3'- -GGCGguCGUCAUGUUGCUGU--------AAUGGa -5'
21271 5' -50.2 NC_004778.3 + 2057 0.77 0.63858
Target:  5'- gCGCCGGCGGUuauaaucaaaccuGCAGCGGCug-GCCa -3'
miRNA:   3'- gGCGGUCGUCA-------------UGUUGCUGuaaUGGa -5'
21271 5' -50.2 NC_004778.3 + 43418 0.76 0.661109
Target:  5'- -aGCCGGCGGacaGCGACGACAgcgACCa -3'
miRNA:   3'- ggCGGUCGUCa--UGUUGCUGUaa-UGGa -5'
21271 5' -50.2 NC_004778.3 + 57062 0.76 0.693072
Target:  5'- gCGCCAGCAGcgcggACGACGcucCGUUGCCc -3'
miRNA:   3'- gGCGGUCGUCa----UGUUGCu--GUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 36862 0.75 0.744065
Target:  5'- gCGCCGGCGGUGCGcgucuuggcgagcGCGGUGUUGCCc -3'
miRNA:   3'- gGCGGUCGUCAUGU-------------UGCUGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 68614 0.74 0.775068
Target:  5'- aCGCCGGCGGcgGCGGCGGCGgcgGCg- -3'
miRNA:   3'- gGCGGUCGUCa-UGUUGCUGUaa-UGga -5'
21271 5' -50.2 NC_004778.3 + 101733 0.73 0.81303
Target:  5'- aCCGCC-GCGGuUGCAAacGCGUUGCCUg -3'
miRNA:   3'- -GGCGGuCGUC-AUGUUgcUGUAAUGGA- -5'
21271 5' -50.2 NC_004778.3 + 22411 0.73 0.822093
Target:  5'- gCGCCAGCGGUACGGgcgcguCGGCAUcaaacaaGCCUu -3'
miRNA:   3'- gGCGGUCGUCAUGUU------GCUGUAa------UGGA- -5'
21271 5' -50.2 NC_004778.3 + 21089 0.73 0.830965
Target:  5'- gCGUCAGCgcGGUGCAGCccgcggagcgGACGUUGCCc -3'
miRNA:   3'- gGCGGUCG--UCAUGUUG----------CUGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 4961 0.73 0.830965
Target:  5'- gCGUCAuGC-GUGCGccGCGACAUUGCCa -3'
miRNA:   3'- gGCGGU-CGuCAUGU--UGCUGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 5201 0.72 0.856353
Target:  5'- gCCGCCAGUcGcGCGGCGACAU--CCg -3'
miRNA:   3'- -GGCGGUCGuCaUGUUGCUGUAauGGa -5'
21271 5' -50.2 NC_004778.3 + 53147 0.72 0.86438
Target:  5'- gCCGCCGGCguuAGUGCAACaGAUAgaguugucgGCCg -3'
miRNA:   3'- -GGCGGUCG---UCAUGUUG-CUGUaa-------UGGa -5'
21271 5' -50.2 NC_004778.3 + 47511 0.71 0.913793
Target:  5'- aCGCCGcacGCuGUGCAGCGGCGgcaucACCUc -3'
miRNA:   3'- gGCGGU---CGuCAUGUUGCUGUaa---UGGA- -5'
21271 5' -50.2 NC_004778.3 + 44143 0.71 0.913793
Target:  5'- cCCGCCGGCcgcgcGUugGGCGGCGc-GCCa -3'
miRNA:   3'- -GGCGGUCGu----CAugUUGCUGUaaUGGa -5'
21271 5' -50.2 NC_004778.3 + 34518 0.7 0.94328
Target:  5'- aCCGCguGCugcuuauguccaucaAGUGCGGCGGCGUgggACUg -3'
miRNA:   3'- -GGCGguCG---------------UCAUGUUGCUGUAa--UGGa -5'
21271 5' -50.2 NC_004778.3 + 87231 0.7 0.946085
Target:  5'- cCCGCCAGCucauuacggacaAGUGCAGCGAauuaAUUGaaaCa -3'
miRNA:   3'- -GGCGGUCG------------UCAUGUUGCUg---UAAUg--Ga -5'
21271 5' -50.2 NC_004778.3 + 21082 0.7 0.946085
Target:  5'- gCgGCCGGCuGgGCuGCGGCAUUAUCg -3'
miRNA:   3'- -GgCGGUCGuCaUGuUGCUGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 35054 0.69 0.954769
Target:  5'- gCGCUuGCGGUAUAACGcCGcUGCCg -3'
miRNA:   3'- gGCGGuCGUCAUGUUGCuGUaAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.