miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21271 5' -50.2 NC_004778.3 + 66878 0.67 0.986685
Target:  5'- gCGUCGGCgccguuuuuuuuucgAGUACGGCGuCAggGCCg -3'
miRNA:   3'- gGCGGUCG---------------UCAUGUUGCuGUaaUGGa -5'
21271 5' -50.2 NC_004778.3 + 17279 0.67 0.986
Target:  5'- gUCGCUGGCA-----ACGGCGUUGCCa -3'
miRNA:   3'- -GGCGGUCGUcauguUGCUGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 53286 0.67 0.986
Target:  5'- aCGCCGGCGGcgguUGCugugGCGGCgGUUGCUg -3'
miRNA:   3'- gGCGGUCGUC----AUGu---UGCUG-UAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 26890 0.67 0.986
Target:  5'- cCCGCgCuGCAG-GCcGCGGCGUUugCg -3'
miRNA:   3'- -GGCG-GuCGUCaUGuUGCUGUAAugGa -5'
21271 5' -50.2 NC_004778.3 + 81839 0.67 0.986
Target:  5'- gCCGCCauuGGCGGaucgggaGCGGCGGCGguagACCa -3'
miRNA:   3'- -GGCGG---UCGUCa------UGUUGCUGUaa--UGGa -5'
21271 5' -50.2 NC_004778.3 + 126163 0.67 0.983783
Target:  5'- uUGCCGGCAGgacgacucccacGCAGCGuCAUgcgcgGCCUu -3'
miRNA:   3'- gGCGGUCGUCa-----------UGUUGCuGUAa----UGGA- -5'
21271 5' -50.2 NC_004778.3 + 115143 0.67 0.982164
Target:  5'- aCCGCCAGCgcgGGUcAUAAUGugGUggugcucuUGCCg -3'
miRNA:   3'- -GGCGGUCG---UCA-UGUUGCugUA--------AUGGa -5'
21271 5' -50.2 NC_004778.3 + 51435 0.67 0.982164
Target:  5'- gUGCacaAGCGGUACAugaGGCAUUGCg- -3'
miRNA:   3'- gGCGg--UCGUCAUGUug-CUGUAAUGga -5'
21271 5' -50.2 NC_004778.3 + 36011 0.68 0.979973
Target:  5'- aCCGCaCGGCGG-GCAACGcCAUccgcaugggcgUGCCg -3'
miRNA:   3'- -GGCG-GUCGUCaUGUUGCuGUA-----------AUGGa -5'
21271 5' -50.2 NC_004778.3 + 21192 0.68 0.979973
Target:  5'- cUCGCCGGCGgacGUGCAGC--CGUUGCUg -3'
miRNA:   3'- -GGCGGUCGU---CAUGUUGcuGUAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 26789 0.68 0.977587
Target:  5'- gCGUgGGCGgaauuGUACAGCGACAgcgugcacgUGCCg -3'
miRNA:   3'- gGCGgUCGU-----CAUGUUGCUGUa--------AUGGa -5'
21271 5' -50.2 NC_004778.3 + 101864 0.68 0.977587
Target:  5'- aCGCCGcGCAuuGUACAGCGcCGUagACCa -3'
miRNA:   3'- gGCGGU-CGU--CAUGUUGCuGUAa-UGGa -5'
21271 5' -50.2 NC_004778.3 + 53208 0.68 0.974999
Target:  5'- gCGgCGGCGGUugcuGCGGCGGCgGUUGCUg -3'
miRNA:   3'- gGCgGUCGUCA----UGUUGCUG-UAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 16304 0.68 0.974999
Target:  5'- gUGCCGGCAGgcguCGGCGugAUaACUg -3'
miRNA:   3'- gGCGGUCGUCau--GUUGCugUAaUGGa -5'
21271 5' -50.2 NC_004778.3 + 53238 0.68 0.974999
Target:  5'- gCGgCGGCGGUugcuGCGGCGGCgGUUGCUg -3'
miRNA:   3'- gGCgGUCGUCA----UGUUGCUG-UAAUGGa -5'
21271 5' -50.2 NC_004778.3 + 15872 0.68 0.974999
Target:  5'- gCCGCUuGUGGacACAACGGCGUUGCa- -3'
miRNA:   3'- -GGCGGuCGUCa-UGUUGCUGUAAUGga -5'
21271 5' -50.2 NC_004778.3 + 36152 0.68 0.972198
Target:  5'- cCCGCCGuGCGGUGCcaucccAACGAguUgacgGCCg -3'
miRNA:   3'- -GGCGGU-CGUCAUG------UUGCUguAa---UGGa -5'
21271 5' -50.2 NC_004778.3 + 119926 0.68 0.972198
Target:  5'- gCGCgAGCAGgGCAuCGAUAUUccGCCg -3'
miRNA:   3'- gGCGgUCGUCaUGUuGCUGUAA--UGGa -5'
21271 5' -50.2 NC_004778.3 + 49259 0.68 0.969179
Target:  5'- gUCGCCAGUuGUAgAACGGCucguccaUACCg -3'
miRNA:   3'- -GGCGGUCGuCAUgUUGCUGua-----AUGGa -5'
21271 5' -50.2 NC_004778.3 + 50447 0.68 0.969179
Target:  5'- aCCGauuacagcuUCAGCAugacGUACAACGACGgcGCCg -3'
miRNA:   3'- -GGC---------GGUCGU----CAUGUUGCUGUaaUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.