miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21272 3' -47.9 NC_004778.3 + 45740 0.65 0.998721
Target:  5'- ---aGAAGGCgcgccaGGCGCuggaggagcgcuacGUGCGCGUUAa -3'
miRNA:   3'- uuaaUUUUCGa-----CUGCG--------------UACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 111564 0.66 0.997838
Target:  5'- -----uGAGCUGGCGaccggGCGCGcCAa -3'
miRNA:   3'- uuaauuUUCGACUGCgua--CGCGCaGU- -5'
21272 3' -47.9 NC_004778.3 + 84136 0.66 0.997838
Target:  5'- -------uGCUcGGCacacauaaaaGCAUGCGCGUCAg -3'
miRNA:   3'- uuaauuuuCGA-CUG----------CGUACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 122544 0.66 0.997402
Target:  5'- -------cGCUGACGCAcGCGacgcaCGUCAu -3'
miRNA:   3'- uuaauuuuCGACUGCGUaCGC-----GCAGU- -5'
21272 3' -47.9 NC_004778.3 + 8747 0.66 0.997355
Target:  5'- cGGUUGGAGGCuagaaaaUGGCGCAcguugGCGuUGUCAa -3'
miRNA:   3'- -UUAAUUUUCG-------ACUGCGUa----CGC-GCAGU- -5'
21272 3' -47.9 NC_004778.3 + 25660 0.67 0.996895
Target:  5'- ---cGGGGGCcGGCgGCGUGUGgGUCAa -3'
miRNA:   3'- uuaaUUUUCGaCUG-CGUACGCgCAGU- -5'
21272 3' -47.9 NC_004778.3 + 25218 0.67 0.996309
Target:  5'- --aUAGAAGCUG-CGCGuuUGCGCa--- -3'
miRNA:   3'- uuaAUUUUCGACuGCGU--ACGCGcagu -5'
21272 3' -47.9 NC_004778.3 + 27444 0.67 0.995634
Target:  5'- -------cGCgaggGGCGCGUGCGCGa-- -3'
miRNA:   3'- uuaauuuuCGa---CUGCGUACGCGCagu -5'
21272 3' -47.9 NC_004778.3 + 28896 0.67 0.995634
Target:  5'- -------cGCUGuuuGCGCGUGCGCGa-- -3'
miRNA:   3'- uuaauuuuCGAC---UGCGUACGCGCagu -5'
21272 3' -47.9 NC_004778.3 + 28980 0.67 0.995634
Target:  5'- ---cGAGAGCUGauuGCGCuaauGUGCGCGg-- -3'
miRNA:   3'- uuaaUUUUCGAC---UGCG----UACGCGCagu -5'
21272 3' -47.9 NC_004778.3 + 33980 0.67 0.994863
Target:  5'- cGUUGAgcgcgcAGGCUGcCGCGUGCaCGUCc -3'
miRNA:   3'- uUAAUU------UUCGACuGCGUACGcGCAGu -5'
21272 3' -47.9 NC_004778.3 + 46412 0.67 0.994863
Target:  5'- --------uUUGGCGCGUGCcGCGUCGc -3'
miRNA:   3'- uuaauuuucGACUGCGUACG-CGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 74170 0.67 0.994863
Target:  5'- -------uGCUGGCGC-UGCGCGg-- -3'
miRNA:   3'- uuaauuuuCGACUGCGuACGCGCagu -5'
21272 3' -47.9 NC_004778.3 + 103448 0.67 0.993984
Target:  5'- -----cGAGCUGAUGCAcGCGCacaUCAa -3'
miRNA:   3'- uuaauuUUCGACUGCGUaCGCGc--AGU- -5'
21272 3' -47.9 NC_004778.3 + 127821 0.67 0.993984
Target:  5'- -------cGCUGACGCGcaUGCGUCAg -3'
miRNA:   3'- uuaauuuuCGACUGCGUacGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 121683 0.67 0.993984
Target:  5'- -------cGCUG-CGCGUGCGCuUCAc -3'
miRNA:   3'- uuaauuuuCGACuGCGUACGCGcAGU- -5'
21272 3' -47.9 NC_004778.3 + 10750 0.68 0.992989
Target:  5'- -----cGGGCUGcCGUGUGCGCGcCGc -3'
miRNA:   3'- uuaauuUUCGACuGCGUACGCGCaGU- -5'
21272 3' -47.9 NC_004778.3 + 73682 0.68 0.990605
Target:  5'- --aUAAAAGCUGcuGCGCcgccgaauUGCGCGUg- -3'
miRNA:   3'- uuaAUUUUCGAC--UGCGu-------ACGCGCAgu -5'
21272 3' -47.9 NC_004778.3 + 73430 0.68 0.989195
Target:  5'- cGUUGGAAGCgcugGGCGCGuUGgGCGaUCGc -3'
miRNA:   3'- uUAAUUUUCGa---CUGCGU-ACgCGC-AGU- -5'
21272 3' -47.9 NC_004778.3 + 61364 0.68 0.989195
Target:  5'- -------uGCggacGGCGCcgGCGCGUCGu -3'
miRNA:   3'- uuaauuuuCGa---CUGCGuaCGCGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.