miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21272 3' -47.9 NC_004778.3 + 127979 1.07 0.015236
Target:  5'- uAAUUAAAAGCUGACGCAUGCGCGUCAg -3'
miRNA:   3'- -UUAAUUUUCGACUGCGUACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 17781 0.81 0.518209
Target:  5'- -cUUAGAAGCUGACGCcgGCGaUGUUAa -3'
miRNA:   3'- uuAAUUUUCGACUGCGuaCGC-GCAGU- -5'
21272 3' -47.9 NC_004778.3 + 101483 0.78 0.684096
Target:  5'- ---cAAGAGCgGACaguucaGCAUGCGCGUCAa -3'
miRNA:   3'- uuaaUUUUCGaCUG------CGUACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 38008 0.76 0.749168
Target:  5'- ----cAAAGuCUG-CGCGUGCGCGUCGa -3'
miRNA:   3'- uuaauUUUC-GACuGCGUACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 94068 0.73 0.894568
Target:  5'- ---gGAAAGCgGGCGgAUGUGCGUUAu -3'
miRNA:   3'- uuaaUUUUCGaCUGCgUACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 47220 0.73 0.90844
Target:  5'- -----cAAGCUGACGCAcG-GCGUCAu -3'
miRNA:   3'- uuaauuUUCGACUGCGUaCgCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 40517 0.72 0.932795
Target:  5'- -------cGCUucGACGCcgGCGCGUCGc -3'
miRNA:   3'- uuaauuuuCGA--CUGCGuaCGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 16158 0.71 0.948072
Target:  5'- -------cGCUGuGCGaCGUGCGCGUCGc -3'
miRNA:   3'- uuaauuuuCGAC-UGC-GUACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 75150 0.71 0.956864
Target:  5'- ------uGGCUGACGCGauuuuaccUGCGCGUg- -3'
miRNA:   3'- uuaauuuUCGACUGCGU--------ACGCGCAgu -5'
21272 3' -47.9 NC_004778.3 + 31484 0.7 0.964581
Target:  5'- cGAUUAuuuGGCUGAgCGCAaaUGCGCGg-- -3'
miRNA:   3'- -UUAAUuu-UCGACU-GCGU--ACGCGCagu -5'
21272 3' -47.9 NC_004778.3 + 14677 0.7 0.968052
Target:  5'- ------cGGCacgacgUGACGCAcGCGCGUCAc -3'
miRNA:   3'- uuaauuuUCG------ACUGCGUaCGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 32506 0.69 0.977008
Target:  5'- -cUUGAAcauGGCUG-CGuCAUGCGCGcUCAg -3'
miRNA:   3'- uuAAUUU---UCGACuGC-GUACGCGC-AGU- -5'
21272 3' -47.9 NC_004778.3 + 119372 0.69 0.979536
Target:  5'- -----uGAGCUGGCGCAguuuacUGCGUCGg -3'
miRNA:   3'- uuaauuUUCGACUGCGUac----GCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 120127 0.69 0.983964
Target:  5'- --gUAGGGGUUG-CGCucugccUGCGCGUCGu -3'
miRNA:   3'- uuaAUUUUCGACuGCGu-----ACGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 98521 0.68 0.987625
Target:  5'- ---aAAGAGUUGcugcgcccggGCGCgGUGCGCGUCu -3'
miRNA:   3'- uuaaUUUUCGAC----------UGCG-UACGCGCAGu -5'
21272 3' -47.9 NC_004778.3 + 61811 0.68 0.987625
Target:  5'- ------cGGCUGGCccaGCAUGCGCG-CGg -3'
miRNA:   3'- uuaauuuUCGACUG---CGUACGCGCaGU- -5'
21272 3' -47.9 NC_004778.3 + 35145 0.68 0.987625
Target:  5'- ------cGGCcGACGCAaauUGCGCGUUg -3'
miRNA:   3'- uuaauuuUCGaCUGCGU---ACGCGCAGu -5'
21272 3' -47.9 NC_004778.3 + 61364 0.68 0.989195
Target:  5'- -------uGCggacGGCGCcgGCGCGUCGu -3'
miRNA:   3'- uuaauuuuCGa---CUGCGuaCGCGCAGU- -5'
21272 3' -47.9 NC_004778.3 + 73430 0.68 0.989195
Target:  5'- cGUUGGAAGCgcugGGCGCGuUGgGCGaUCGc -3'
miRNA:   3'- uUAAUUUUCGa---CUGCGU-ACgCGC-AGU- -5'
21272 3' -47.9 NC_004778.3 + 73682 0.68 0.990605
Target:  5'- --aUAAAAGCUGcuGCGCcgccgaauUGCGCGUg- -3'
miRNA:   3'- uuaAUUUUCGAC--UGCGu-------ACGCGCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.