Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21272 | 3' | -47.9 | NC_004778.3 | + | 8747 | 0.66 | 0.997355 |
Target: 5'- cGGUUGGAGGCuagaaaaUGGCGCAcguugGCGuUGUCAa -3' miRNA: 3'- -UUAAUUUUCG-------ACUGCGUa----CGC-GCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 10750 | 0.68 | 0.992989 |
Target: 5'- -----cGGGCUGcCGUGUGCGCGcCGc -3' miRNA: 3'- uuaauuUUCGACuGCGUACGCGCaGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 14677 | 0.7 | 0.968052 |
Target: 5'- ------cGGCacgacgUGACGCAcGCGCGUCAc -3' miRNA: 3'- uuaauuuUCG------ACUGCGUaCGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 16158 | 0.71 | 0.948072 |
Target: 5'- -------cGCUGuGCGaCGUGCGCGUCGc -3' miRNA: 3'- uuaauuuuCGAC-UGC-GUACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 17781 | 0.81 | 0.518209 |
Target: 5'- -cUUAGAAGCUGACGCcgGCGaUGUUAa -3' miRNA: 3'- uuAAUUUUCGACUGCGuaCGC-GCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 25218 | 0.67 | 0.996309 |
Target: 5'- --aUAGAAGCUG-CGCGuuUGCGCa--- -3' miRNA: 3'- uuaAUUUUCGACuGCGU--ACGCGcagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 25660 | 0.67 | 0.996895 |
Target: 5'- ---cGGGGGCcGGCgGCGUGUGgGUCAa -3' miRNA: 3'- uuaaUUUUCGaCUG-CGUACGCgCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 27444 | 0.67 | 0.995634 |
Target: 5'- -------cGCgaggGGCGCGUGCGCGa-- -3' miRNA: 3'- uuaauuuuCGa---CUGCGUACGCGCagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 28896 | 0.67 | 0.995634 |
Target: 5'- -------cGCUGuuuGCGCGUGCGCGa-- -3' miRNA: 3'- uuaauuuuCGAC---UGCGUACGCGCagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 28980 | 0.67 | 0.995634 |
Target: 5'- ---cGAGAGCUGauuGCGCuaauGUGCGCGg-- -3' miRNA: 3'- uuaaUUUUCGAC---UGCG----UACGCGCagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 31484 | 0.7 | 0.964581 |
Target: 5'- cGAUUAuuuGGCUGAgCGCAaaUGCGCGg-- -3' miRNA: 3'- -UUAAUuu-UCGACU-GCGU--ACGCGCagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 32506 | 0.69 | 0.977008 |
Target: 5'- -cUUGAAcauGGCUG-CGuCAUGCGCGcUCAg -3' miRNA: 3'- uuAAUUU---UCGACuGC-GUACGCGC-AGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 33980 | 0.67 | 0.994863 |
Target: 5'- cGUUGAgcgcgcAGGCUGcCGCGUGCaCGUCc -3' miRNA: 3'- uUAAUU------UUCGACuGCGUACGcGCAGu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 35145 | 0.68 | 0.987625 |
Target: 5'- ------cGGCcGACGCAaauUGCGCGUUg -3' miRNA: 3'- uuaauuuUCGaCUGCGU---ACGCGCAGu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 38008 | 0.76 | 0.749168 |
Target: 5'- ----cAAAGuCUG-CGCGUGCGCGUCGa -3' miRNA: 3'- uuaauUUUC-GACuGCGUACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 40517 | 0.72 | 0.932795 |
Target: 5'- -------cGCUucGACGCcgGCGCGUCGc -3' miRNA: 3'- uuaauuuuCGA--CUGCGuaCGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 45740 | 0.65 | 0.998721 |
Target: 5'- ---aGAAGGCgcgccaGGCGCuggaggagcgcuacGUGCGCGUUAa -3' miRNA: 3'- uuaaUUUUCGa-----CUGCG--------------UACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 46412 | 0.67 | 0.994863 |
Target: 5'- --------uUUGGCGCGUGCcGCGUCGc -3' miRNA: 3'- uuaauuuucGACUGCGUACG-CGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 47220 | 0.73 | 0.90844 |
Target: 5'- -----cAAGCUGACGCAcG-GCGUCAu -3' miRNA: 3'- uuaauuUUCGACUGCGUaCgCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 61364 | 0.68 | 0.989195 |
Target: 5'- -------uGCggacGGCGCcgGCGCGUCGu -3' miRNA: 3'- uuaauuuuCGa---CUGCGuaCGCGCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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