Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21272 | 3' | -47.9 | NC_004778.3 | + | 120127 | 0.69 | 0.983964 |
Target: 5'- --gUAGGGGUUG-CGCucugccUGCGCGUCGu -3' miRNA: 3'- uuaAUUUUCGACuGCGu-----ACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 14677 | 0.7 | 0.968052 |
Target: 5'- ------cGGCacgacgUGACGCAcGCGCGUCAc -3' miRNA: 3'- uuaauuuUCG------ACUGCGUaCGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 75150 | 0.71 | 0.956864 |
Target: 5'- ------uGGCUGACGCGauuuuaccUGCGCGUg- -3' miRNA: 3'- uuaauuuUCGACUGCGU--------ACGCGCAgu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 94068 | 0.73 | 0.894568 |
Target: 5'- ---gGAAAGCgGGCGgAUGUGCGUUAu -3' miRNA: 3'- uuaaUUUUCGaCUGCgUACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 38008 | 0.76 | 0.749168 |
Target: 5'- ----cAAAGuCUG-CGCGUGCGCGUCGa -3' miRNA: 3'- uuaauUUUC-GACuGCGUACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 101483 | 0.78 | 0.684096 |
Target: 5'- ---cAAGAGCgGACaguucaGCAUGCGCGUCAa -3' miRNA: 3'- uuaaUUUUCGaCUG------CGUACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 73430 | 0.68 | 0.989195 |
Target: 5'- cGUUGGAAGCgcugGGCGCGuUGgGCGaUCGc -3' miRNA: 3'- uUAAUUUUCGa---CUGCGU-ACgCGC-AGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 73682 | 0.68 | 0.990605 |
Target: 5'- --aUAAAAGCUGcuGCGCcgccgaauUGCGCGUg- -3' miRNA: 3'- uuaAUUUUCGAC--UGCGu-------ACGCGCAgu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 45740 | 0.65 | 0.998721 |
Target: 5'- ---aGAAGGCgcgccaGGCGCuggaggagcgcuacGUGCGCGUUAa -3' miRNA: 3'- uuaaUUUUCGa-----CUGCG--------------UACGCGCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 122544 | 0.66 | 0.997402 |
Target: 5'- -------cGCUGACGCAcGCGacgcaCGUCAu -3' miRNA: 3'- uuaauuuuCGACUGCGUaCGC-----GCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 8747 | 0.66 | 0.997355 |
Target: 5'- cGGUUGGAGGCuagaaaaUGGCGCAcguugGCGuUGUCAa -3' miRNA: 3'- -UUAAUUUUCG-------ACUGCGUa----CGC-GCAGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 25218 | 0.67 | 0.996309 |
Target: 5'- --aUAGAAGCUG-CGCGuuUGCGCa--- -3' miRNA: 3'- uuaAUUUUCGACuGCGU--ACGCGcagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 28896 | 0.67 | 0.995634 |
Target: 5'- -------cGCUGuuuGCGCGUGCGCGa-- -3' miRNA: 3'- uuaauuuuCGAC---UGCGUACGCGCagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 28980 | 0.67 | 0.995634 |
Target: 5'- ---cGAGAGCUGauuGCGCuaauGUGCGCGg-- -3' miRNA: 3'- uuaaUUUUCGAC---UGCG----UACGCGCagu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 33980 | 0.67 | 0.994863 |
Target: 5'- cGUUGAgcgcgcAGGCUGcCGCGUGCaCGUCc -3' miRNA: 3'- uUAAUU------UUCGACuGCGUACGcGCAGu -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 103448 | 0.67 | 0.993984 |
Target: 5'- -----cGAGCUGAUGCAcGCGCacaUCAa -3' miRNA: 3'- uuaauuUUCGACUGCGUaCGCGc--AGU- -5' |
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21272 | 3' | -47.9 | NC_004778.3 | + | 127979 | 1.07 | 0.015236 |
Target: 5'- uAAUUAAAAGCUGACGCAUGCGCGUCAg -3' miRNA: 3'- -UUAAUUUUCGACUGCGUACGCGCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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