miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21272 5' -57.2 NC_004778.3 + 9056 0.66 0.818679
Target:  5'- --cGCCGCGcucgaGCGCCg--GCUcaaUGaGUCCg -3'
miRNA:   3'- uuaCGGCGC-----UGCGGagaCGA---AC-CAGG- -5'
21272 5' -57.2 NC_004778.3 + 27704 0.66 0.809874
Target:  5'- cAGUGCCGCGuuCGCC-CUGCUg---CUa -3'
miRNA:   3'- -UUACGGCGCu-GCGGaGACGAaccaGG- -5'
21272 5' -57.2 NC_004778.3 + 61971 0.66 0.809874
Target:  5'- cAUGUCGgGGCGCUugccgCUGCgcgUGG-CCa -3'
miRNA:   3'- uUACGGCgCUGCGGa----GACGa--ACCaGG- -5'
21272 5' -57.2 NC_004778.3 + 64296 0.66 0.791777
Target:  5'- --gGgCGCGACGCgCUgagugaccgUUGCUUGGgcgCCg -3'
miRNA:   3'- uuaCgGCGCUGCG-GA---------GACGAACCa--GG- -5'
21272 5' -57.2 NC_004778.3 + 65894 0.66 0.782503
Target:  5'- --cGCUGCGccaaACGCCgUCUGCaaacgGGUCg -3'
miRNA:   3'- uuaCGGCGC----UGCGG-AGACGaa---CCAGg -5'
21272 5' -57.2 NC_004778.3 + 26757 0.66 0.782503
Target:  5'- cGUGCCGUaccGAauCGCUUCgacGCUUGGUgCg -3'
miRNA:   3'- uUACGGCG---CU--GCGGAGa--CGAACCAgG- -5'
21272 5' -57.2 NC_004778.3 + 69945 0.67 0.772142
Target:  5'- -uUGCCGCGcuuaaaaGCGCg-CUGCUaGGUaCCg -3'
miRNA:   3'- uuACGGCGC-------UGCGgaGACGAaCCA-GG- -5'
21272 5' -57.2 NC_004778.3 + 32465 0.67 0.763549
Target:  5'- --cGCUGCGuguCGCCUUUGCaccagcGGUCg -3'
miRNA:   3'- uuaCGGCGCu--GCGGAGACGaa----CCAGg -5'
21272 5' -57.2 NC_004778.3 + 107969 0.67 0.763549
Target:  5'- --cGCC-CGACGCCUauuUUGCUaUGG-CCg -3'
miRNA:   3'- uuaCGGcGCUGCGGA---GACGA-ACCaGG- -5'
21272 5' -57.2 NC_004778.3 + 2278 0.67 0.763549
Target:  5'- --gGaCCGCGACGCgCUCuuggcagcaUGCaUGGUCg -3'
miRNA:   3'- uuaC-GGCGCUGCG-GAG---------ACGaACCAGg -5'
21272 5' -57.2 NC_004778.3 + 43297 0.67 0.753888
Target:  5'- --gGCCGCGugGCUUCcaacgaguauuUGCUaaucgUGGaCCg -3'
miRNA:   3'- uuaCGGCGCugCGGAG-----------ACGA-----ACCaGG- -5'
21272 5' -57.2 NC_004778.3 + 108880 0.67 0.744117
Target:  5'- uGGUGCCGCGACGCagcgCUGCcacGUacaCCa -3'
miRNA:   3'- -UUACGGCGCUGCGga--GACGaacCA---GG- -5'
21272 5' -57.2 NC_004778.3 + 43278 0.68 0.71424
Target:  5'- --cGCCGCGGCGCCgUCgaagcGCUUGcGcagcagCCg -3'
miRNA:   3'- uuaCGGCGCUGCGG-AGa----CGAAC-Ca-----GG- -5'
21272 5' -57.2 NC_004778.3 + 105151 0.68 0.704124
Target:  5'- --cGCCGCGGCGCgCUUg--UUGGcUCCg -3'
miRNA:   3'- uuaCGGCGCUGCG-GAGacgAACC-AGG- -5'
21272 5' -57.2 NC_004778.3 + 95548 0.68 0.704124
Target:  5'- --aGCUGCGACGCgCU-UGCUUGaaacaccacGUCCg -3'
miRNA:   3'- uuaCGGCGCUGCG-GAgACGAAC---------CAGG- -5'
21272 5' -57.2 NC_004778.3 + 91274 0.68 0.693947
Target:  5'- --gGCCuCGAUGCUUUUGC--GGUCCg -3'
miRNA:   3'- uuaCGGcGCUGCGGAGACGaaCCAGG- -5'
21272 5' -57.2 NC_004778.3 + 95400 0.68 0.683716
Target:  5'- --cGCCGCGGCGCaccaUGCccGaGUCCg -3'
miRNA:   3'- uuaCGGCGCUGCGgag-ACGaaC-CAGG- -5'
21272 5' -57.2 NC_004778.3 + 10438 0.69 0.609309
Target:  5'- --aGUCGCGAgCGCCUUUGCaaugcgccgccGGUCCc -3'
miRNA:   3'- uuaCGGCGCU-GCGGAGACGaa---------CCAGG- -5'
21272 5' -57.2 NC_004778.3 + 6288 0.71 0.539772
Target:  5'- cGUGCCGUGAguagccUGCCUCUGCauaagaUGGggCCa -3'
miRNA:   3'- uUACGGCGCU------GCGGAGACGa-----ACCa-GG- -5'
21272 5' -57.2 NC_004778.3 + 62338 0.71 0.500104
Target:  5'- ---aCCGCGAgGCUgagCUGCUUGG-CCg -3'
miRNA:   3'- uuacGGCGCUgCGGa--GACGAACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.