miRNA: 3'- aaCAGCGCGUGUAa--CCGGUGGA-CAGC- -5'
miRNA: 3'- aaCAGCGCGuGuaACCGGUGGacagc -5'
miRNA: 3'- -AACAGc-GCGUGUa-----ACCGGUGG-ACAGc -5'
miRNA: 3'- -AACAGCGCGUGUAACCGGUGGACAGC- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21273 | 3' | -55.7 | NC_004778.3 | + | 73453 | 0.71 | 0.617961 |
|
Target: 5'- -gGUCGUGCGCGUgacGGUCACUUcGUUGg -3' miRNA: 3'- aaCAGCGCGUGUAa--CCGGUGGA-CAGC- -5' |
|||||||
| 21273 | 3' | -55.7 | NC_004778.3 | + | 64158 | 0.71 | 0.59702 |
|
Target: 5'- -cGUCGCGC-CcgUGGCCGCCg---- -3' miRNA: 3'- aaCAGCGCGuGuaACCGGUGGacagc -5' |
|||||||
| 21273 | 3' | -55.7 | NC_004778.3 | + | 57621 | 0.71 | 0.586586 |
|
Target: 5'- cUUGUCcaCGCACGggcgcgUGGCCACCaUGUCc -3' miRNA: 3'- -AACAGc-GCGUGUa-----ACCGGUGG-ACAGc -5' |
|||||||
| 21273 | 3' | -55.7 | NC_004778.3 | + | 2189 | 1.06 | 0.003582 |
|
Target: 5'- aUUGUCGCGCACAUUGGCCACCUGUCGc -3' miRNA: 3'- -AACAGCGCGUGUAACCGGUGGACAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home