miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21275 3' -48.3 NC_004778.3 + 67041 0.66 0.997594
Target:  5'- uGAcgCCGUACUCGAAaaaaaaacGGCGCCg--- -3'
miRNA:   3'- gUUaaGGCGUGAGUUU--------CCGUGGaauu -5'
21275 3' -48.3 NC_004778.3 + 69942 0.66 0.997594
Target:  5'- aAAUUgCCGCGCUUAAaagcgcgcugcuAGGUACCg--- -3'
miRNA:   3'- gUUAA-GGCGUGAGUU------------UCCGUGGaauu -5'
21275 3' -48.3 NC_004778.3 + 73612 0.66 0.997119
Target:  5'- ----gUCGCGCUCGGAcaguGGCGCCg--- -3'
miRNA:   3'- guuaaGGCGUGAGUUU----CCGUGGaauu -5'
21275 3' -48.3 NC_004778.3 + 8816 0.66 0.996569
Target:  5'- -----gCGCGCUCAGcgaauGGCGCCUa-- -3'
miRNA:   3'- guuaagGCGUGAGUUu----CCGUGGAauu -5'
21275 3' -48.3 NC_004778.3 + 112363 0.66 0.996449
Target:  5'- ----aCCGCGCggccgcuaugcgCGAGGGCGCCg--- -3'
miRNA:   3'- guuaaGGCGUGa-----------GUUUCCGUGGaauu -5'
21275 3' -48.3 NC_004778.3 + 17171 0.67 0.995208
Target:  5'- -uAUUCCGCGC----GGGCACCg--- -3'
miRNA:   3'- guUAAGGCGUGaguuUCCGUGGaauu -5'
21275 3' -48.3 NC_004778.3 + 34463 0.67 0.995208
Target:  5'- cCAGUUCCaGCACgCGccGGCACUUg-- -3'
miRNA:   3'- -GUUAAGG-CGUGaGUuuCCGUGGAauu -5'
21275 3' -48.3 NC_004778.3 + 73230 0.69 0.978188
Target:  5'- cCAAUUCCGUAUUUAucGGUACUa--- -3'
miRNA:   3'- -GUUAAGGCGUGAGUuuCCGUGGaauu -5'
21275 3' -48.3 NC_004778.3 + 12749 0.69 0.978188
Target:  5'- cCGAUUCCGCugUC--GGGCGagCUUGGg -3'
miRNA:   3'- -GUUAAGGCGugAGuuUCCGUg-GAAUU- -5'
21275 3' -48.3 NC_004778.3 + 100849 0.71 0.929908
Target:  5'- --uUUCCGgGCggCAAAGGCGCCa--- -3'
miRNA:   3'- guuAAGGCgUGa-GUUUCCGUGGaauu -5'
21275 3' -48.3 NC_004778.3 + 102775 0.71 0.929908
Target:  5'- --uUUCCGCACUUGAAGGCAa----- -3'
miRNA:   3'- guuAAGGCGUGAGUUUCCGUggaauu -5'
21275 3' -48.3 NC_004778.3 + 4631 1.07 0.013455
Target:  5'- aCAAUUCCGCACUCAAAGGCACCUUAAa -3'
miRNA:   3'- -GUUAAGGCGUGAGUUUCCGUGGAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.