miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21275 5' -57.6 NC_004778.3 + 72498 0.66 0.835208
Target:  5'- cGCCgucGGUGgCGUUGAgcgucgacGACGCGgacGCCg -3'
miRNA:   3'- uCGGa--CCACgGCAGCUa-------UUGCGC---CGG- -5'
21275 5' -57.6 NC_004778.3 + 102495 0.66 0.826884
Target:  5'- uGCUcuuagUGGgcuacGCCGUCGAaAACGgCGuGCCg -3'
miRNA:   3'- uCGG-----ACCa----CGGCAGCUaUUGC-GC-CGG- -5'
21275 5' -57.6 NC_004778.3 + 88154 0.66 0.826884
Target:  5'- uGCUcgaguUGGUcaCCGUCGGUAgGCGUGGCg -3'
miRNA:   3'- uCGG-----ACCAc-GGCAGCUAU-UGCGCCGg -5'
21275 5' -57.6 NC_004778.3 + 47332 0.66 0.826884
Target:  5'- uGCCUaaacGGUGCCaacgaGGUGAUGCcGCCg -3'
miRNA:   3'- uCGGA----CCACGGcag--CUAUUGCGcCGG- -5'
21275 5' -57.6 NC_004778.3 + 95624 0.66 0.818384
Target:  5'- cGGCgaGG-GCCGUUGcaua-GUGGCCa -3'
miRNA:   3'- -UCGgaCCaCGGCAGCuauugCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 18831 0.66 0.818384
Target:  5'- uGGCUUaGUGUCGUgGGUugcuuCGCGGCa -3'
miRNA:   3'- -UCGGAcCACGGCAgCUAuu---GCGCCGg -5'
21275 5' -57.6 NC_004778.3 + 82264 0.66 0.818384
Target:  5'- cAGCgUGGUGCguUUGu---CGCGGCCc -3'
miRNA:   3'- -UCGgACCACGgcAGCuauuGCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 69758 0.66 0.814937
Target:  5'- cGCaCUGGUGCCacugguguggcgCGAgaaccgaGAgGCGGCCg -3'
miRNA:   3'- uCG-GACCACGGca----------GCUa------UUgCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 33170 0.66 0.809716
Target:  5'- cGGCaagGGUGCUGg----AACGCGGCg -3'
miRNA:   3'- -UCGga-CCACGGCagcuaUUGCGCCGg -5'
21275 5' -57.6 NC_004778.3 + 6194 0.67 0.791909
Target:  5'- cAGUCgUGG-GCCcgcgaGUCaAUGGCGCGGCUa -3'
miRNA:   3'- -UCGG-ACCaCGG-----CAGcUAUUGCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 112692 0.67 0.782788
Target:  5'- uGCUcacUGCCGUCGAccuuacgAACGCGaGCCg -3'
miRNA:   3'- uCGGaccACGGCAGCUa------UUGCGC-CGG- -5'
21275 5' -57.6 NC_004778.3 + 113886 0.67 0.773531
Target:  5'- uGGCC-GG-GCgCGUCGGgcgAAgGCGGCg -3'
miRNA:   3'- -UCGGaCCaCG-GCAGCUa--UUgCGCCGg -5'
21275 5' -57.6 NC_004778.3 + 20465 0.67 0.76415
Target:  5'- cGCCgaUGGUGCCGUUa--GACcguaCGGCCa -3'
miRNA:   3'- uCGG--ACCACGGCAGcuaUUGc---GCCGG- -5'
21275 5' -57.6 NC_004778.3 + 50369 0.67 0.76415
Target:  5'- cGCgUGGUGaCCGUCGc--GCGCcacuGCCg -3'
miRNA:   3'- uCGgACCAC-GGCAGCuauUGCGc---CGG- -5'
21275 5' -57.6 NC_004778.3 + 106663 0.68 0.735344
Target:  5'- uAGCCUGGcuaaaaGCgCGUCuuUGAggccucaauCGCGGCCa -3'
miRNA:   3'- -UCGGACCa-----CG-GCAGcuAUU---------GCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 89351 0.68 0.735344
Target:  5'- uAGCCaGGcGCCcaaaaaGAcgGGCGCGGCCa -3'
miRNA:   3'- -UCGGaCCaCGGcag---CUa-UUGCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 66098 0.68 0.705738
Target:  5'- uGCCgauccGUGUuugaCGgCGAUGACGUGGCCg -3'
miRNA:   3'- uCGGac---CACG----GCaGCUAUUGCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 55430 0.68 0.705738
Target:  5'- uGGCCa-GU-CCGUCGGUuaaacACGUGGCCa -3'
miRNA:   3'- -UCGGacCAcGGCAGCUAu----UGCGCCGG- -5'
21275 5' -57.6 NC_004778.3 + 14323 0.68 0.705738
Target:  5'- --gCUGGUGCCGgCGAaaUAACGUGGg- -3'
miRNA:   3'- ucgGACCACGGCaGCU--AUUGCGCCgg -5'
21275 5' -57.6 NC_004778.3 + 33069 0.68 0.695733
Target:  5'- gAGCCUGGcGCaa-CGGUGcaGCGGCCc -3'
miRNA:   3'- -UCGGACCaCGgcaGCUAUugCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.