miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21276 5' -51.5 NC_004778.3 + 120933 0.66 0.981953
Target:  5'- --gUGUGGGCGGGggcgguaauacgaUGACuGGCGGGGCGc -3'
miRNA:   3'- uuuGCGCUUGCCC-------------AUUG-UCGCCUUGU- -5'
21276 5' -51.5 NC_004778.3 + 48943 0.66 0.977587
Target:  5'- aGGACGUGGGCGuGGgaGACGGUGGcGCc -3'
miRNA:   3'- -UUUGCGCUUGC-CCa-UUGUCGCCuUGu -5'
21276 5' -51.5 NC_004778.3 + 29072 0.66 0.977587
Target:  5'- gAggUGCGAAuuguuCGGGcgccgccuCGGCGGAGCGg -3'
miRNA:   3'- -UuuGCGCUU-----GCCCauu-----GUCGCCUUGU- -5'
21276 5' -51.5 NC_004778.3 + 81749 0.66 0.972198
Target:  5'- cGGCGCG-GCGGGU---GGCGGAcCGa -3'
miRNA:   3'- uUUGCGCuUGCCCAuugUCGCCUuGU- -5'
21276 5' -51.5 NC_004778.3 + 45282 0.66 0.972198
Target:  5'- -cGCGCGGcCGGGUcgcucuccACAGCGGGc-- -3'
miRNA:   3'- uuUGCGCUuGCCCAu-------UGUCGCCUugu -5'
21276 5' -51.5 NC_004778.3 + 25948 0.67 0.969179
Target:  5'- uAGCGCG-GCGGG--GCAGCGuGGCGg -3'
miRNA:   3'- uUUGCGCuUGCCCauUGUCGCcUUGU- -5'
21276 5' -51.5 NC_004778.3 + 27962 0.67 0.954769
Target:  5'- cGAGCGCGAcaaGCGGcccGUGcaugcgguGCAGCGcGGGCAg -3'
miRNA:   3'- -UUUGCGCU---UGCC---CAU--------UGUCGC-CUUGU- -5'
21276 5' -51.5 NC_004778.3 + 85447 0.68 0.941358
Target:  5'- uGGACGCGGGCGuuu-GCGGCGGcGACGg -3'
miRNA:   3'- -UUUGCGCUUGCccauUGUCGCC-UUGU- -5'
21276 5' -51.5 NC_004778.3 + 85477 0.68 0.941358
Target:  5'- uGGACGCGGGCGuuu-GCGGCGGcGACGg -3'
miRNA:   3'- -UUUGCGCUUGCccauUGUCGCC-UUGU- -5'
21276 5' -51.5 NC_004778.3 + 120311 0.69 0.925608
Target:  5'- gAAGCGUGAAUaGGG-AACGGUcuuGGAACAu -3'
miRNA:   3'- -UUUGCGCUUG-CCCaUUGUCG---CCUUGU- -5'
21276 5' -51.5 NC_004778.3 + 121244 0.69 0.925608
Target:  5'- ---gGCGAGuCGGGgucuGCGGCGGggUc -3'
miRNA:   3'- uuugCGCUU-GCCCau--UGUCGCCuuGu -5'
21276 5' -51.5 NC_004778.3 + 70505 0.69 0.900933
Target:  5'- -uGCGCGGAU--GUAGCAGUGGAAUg -3'
miRNA:   3'- uuUGCGCUUGccCAUUGUCGCCUUGu -5'
21276 5' -51.5 NC_004778.3 + 42572 0.7 0.878989
Target:  5'- -uGCGCGGuggaaaaACGGGU-ACAGcCGGGACc -3'
miRNA:   3'- uuUGCGCU-------UGCCCAuUGUC-GCCUUGu -5'
21276 5' -51.5 NC_004778.3 + 38326 0.71 0.848103
Target:  5'- uGAUGCGAcuaggcGCGGGUAGCguggaggugucgAGCGGcGCAg -3'
miRNA:   3'- uUUGCGCU------UGCCCAUUG------------UCGCCuUGU- -5'
21276 5' -51.5 NC_004778.3 + 39496 0.75 0.650389
Target:  5'- ---aGCGAAUGGGUAGCGugacguGCGGAAUg -3'
miRNA:   3'- uuugCGCUUGCCCAUUGU------CGCCUUGu -5'
21276 5' -51.5 NC_004778.3 + 7314 1.06 0.009229
Target:  5'- uAAACGCGAACGGGUAACAGCGGAACAc -3'
miRNA:   3'- -UUUGCGCUUGCCCAUUGUCGCCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.