miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21277 5' -66 NC_004778.3 + 64534 0.66 0.434166
Target:  5'- aCAGC-GUGGGGUGGUacaGGUGCGCa- -3'
miRNA:   3'- aGUCGcCGCUCCGCCGc--CCGCGCGag -5'
21277 5' -66 NC_004778.3 + 118781 0.66 0.434166
Target:  5'- -gGGC-GCGGcGCGGCcGGCGCGCa- -3'
miRNA:   3'- agUCGcCGCUcCGCCGcCCGCGCGag -5'
21277 5' -66 NC_004778.3 + 108420 0.66 0.434166
Target:  5'- --cGCGGCGcAGGUGGaCGcgcuGGUGCGC-Cg -3'
miRNA:   3'- aguCGCCGC-UCCGCC-GC----CCGCGCGaG- -5'
21277 5' -66 NC_004778.3 + 98142 0.66 0.425686
Target:  5'- gUCcGUGGaaaaGGGGCGaucGCccGGCGCGCUCg -3'
miRNA:   3'- -AGuCGCCg---CUCCGC---CGc-CCGCGCGAG- -5'
21277 5' -66 NC_004778.3 + 74986 0.66 0.423161
Target:  5'- aUCGGCgcccaccgacuacgGGCGcaAGGCGGUguacuugccGGGCGUGC-Cg -3'
miRNA:   3'- -AGUCG--------------CCGC--UCCGCCG---------CCCGCGCGaG- -5'
21277 5' -66 NC_004778.3 + 8903 0.66 0.417305
Target:  5'- gUAGUGGaCGGGGUGGCGcgccacGGCGCcgGCg- -3'
miRNA:   3'- aGUCGCC-GCUCCGCCGC------CCGCG--CGag -5'
21277 5' -66 NC_004778.3 + 71994 0.66 0.409025
Target:  5'- aCAGCGGaacAGGCacaagauuuGGUGGGCGCGaaagCa -3'
miRNA:   3'- aGUCGCCgc-UCCG---------CCGCCCGCGCga--G- -5'
21277 5' -66 NC_004778.3 + 27886 0.66 0.400848
Target:  5'- gCGGCGGCGAGuguGUGGCGGccaGCGaaCa -3'
miRNA:   3'- aGUCGCCGCUC---CGCCGCCcg-CGCgaG- -5'
21277 5' -66 NC_004778.3 + 32283 0.66 0.384812
Target:  5'- cCGGCGGCGccGUGuCGGGCugGUGCUUa -3'
miRNA:   3'- aGUCGCCGCucCGCcGCCCG--CGCGAG- -5'
21277 5' -66 NC_004778.3 + 22463 0.67 0.369205
Target:  5'- --uGCaGGCcaGAccaugucguuGGUGGCGGGCGCGCa- -3'
miRNA:   3'- aguCG-CCG--CU----------CCGCCGCCCGCGCGag -5'
21277 5' -66 NC_004778.3 + 45476 0.67 0.369205
Target:  5'- cCGGCGGCGAGcGCacacaGCGGaCgGCGUUCa -3'
miRNA:   3'- aGUCGCCGCUC-CGc----CGCCcG-CGCGAG- -5'
21277 5' -66 NC_004778.3 + 85462 0.67 0.361566
Target:  5'- gCGGCGGCGAcGGCauggacGCGGGCGUu--- -3'
miRNA:   3'- aGUCGCCGCU-CCGc-----CGCCCGCGcgag -5'
21277 5' -66 NC_004778.3 + 53193 0.67 0.360808
Target:  5'- gCGGCGGCGGuugcuguGGCGGCGGuuGCuGUg- -3'
miRNA:   3'- aGUCGCCGCU-------CCGCCGCCcgCG-CGag -5'
21277 5' -66 NC_004778.3 + 53162 0.67 0.360808
Target:  5'- -uGGCGGCGGuugcuguGGCGGCGGuuGCGg-- -3'
miRNA:   3'- agUCGCCGCU-------CCGCCGCCcgCGCgag -5'
21277 5' -66 NC_004778.3 + 43208 0.67 0.354786
Target:  5'- cCAGCGaGCacuucaagaguaucGAGGaGGCGGGCGaaacaaacaugagcaCGCUCa -3'
miRNA:   3'- aGUCGC-CG--------------CUCCgCCGCCCGC---------------GCGAG- -5'
21277 5' -66 NC_004778.3 + 128776 0.67 0.354038
Target:  5'- aCGGCGGCgGAGGCGGa-GGCGgagGCg- -3'
miRNA:   3'- aGUCGCCG-CUCCGCCgcCCGCg--CGag -5'
21277 5' -66 NC_004778.3 + 128695 0.67 0.354038
Target:  5'- aCGGCGGCgGAGGCGGa-GGCGgagGCg- -3'
miRNA:   3'- aGUCGCCG-CUCCGCCgcCCGCg--CGag -5'
21277 5' -66 NC_004778.3 + 53283 0.67 0.353291
Target:  5'- cCGGCGGCGGuugcuguGGCGGCGGuuGCuGUg- -3'
miRNA:   3'- aGUCGCCGCU-------CCGCCGCCcgCG-CGag -5'
21277 5' -66 NC_004778.3 + 107632 0.67 0.351057
Target:  5'- gUCGGCGGCGuuaGCGGCaaauugacaaaCGCGCUCa -3'
miRNA:   3'- -AGUCGCCGCuc-CGCCGccc--------GCGCGAG- -5'
21277 5' -66 NC_004778.3 + 106457 0.67 0.346621
Target:  5'- cCGG-GGCuGGGGCugcGGCGGGCacggGCGCUg -3'
miRNA:   3'- aGUCgCCG-CUCCG---CCGCCCG----CGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.