miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21278 3' -51.1 NC_004778.3 + 83721 0.66 0.987726
Target:  5'- gAACAUG-CGCgGU-CuuuUGGAGGCCg -3'
miRNA:   3'- -UUGUGCaGCGgCAuGuauACCUCUGG- -5'
21278 3' -51.1 NC_004778.3 + 57260 0.66 0.986078
Target:  5'- cAGCAC--CGCCGUAaaguUGGAGugCg -3'
miRNA:   3'- -UUGUGcaGCGGCAUguauACCUCugG- -5'
21278 3' -51.1 NC_004778.3 + 47756 0.66 0.984266
Target:  5'- cGCGgGUCGCCGUACAguaGGcacuCCa -3'
miRNA:   3'- uUGUgCAGCGGCAUGUauaCCucu-GG- -5'
21278 3' -51.1 NC_004778.3 + 14954 0.66 0.98228
Target:  5'- cGCGUGUCGUCGUACugcacGcGGGACCg -3'
miRNA:   3'- uUGUGCAGCGGCAUGuaua-C-CUCUGG- -5'
21278 3' -51.1 NC_004778.3 + 49323 0.66 0.98228
Target:  5'- gGACGCGgCGCCGcacaACGUGUGcGGcACCa -3'
miRNA:   3'- -UUGUGCaGCGGCa---UGUAUACcUC-UGG- -5'
21278 3' -51.1 NC_004778.3 + 25493 0.67 0.980111
Target:  5'- -uUAUGUCGCCGcgACAaAUGGccGCCa -3'
miRNA:   3'- uuGUGCAGCGGCa-UGUaUACCucUGG- -5'
21278 3' -51.1 NC_004778.3 + 51845 0.67 0.979423
Target:  5'- gAACACGUCGCCGUuguaaucaaggauaACGUcagGGuuGGCg -3'
miRNA:   3'- -UUGUGCAGCGGCA--------------UGUAua-CCu-CUGg -5'
21278 3' -51.1 NC_004778.3 + 117674 0.67 0.97775
Target:  5'- gAugGCGUgcUGCUGUGCGccGUGGAccGGCCg -3'
miRNA:   3'- -UugUGCA--GCGGCAUGUa-UACCU--CUGG- -5'
21278 3' -51.1 NC_004778.3 + 95005 0.67 0.975188
Target:  5'- cGCGCG-CGCCGUGCGccgacgGGcaggugcgccuGGACCa -3'
miRNA:   3'- uUGUGCaGCGGCAUGUaua---CC-----------UCUGG- -5'
21278 3' -51.1 NC_004778.3 + 82868 0.67 0.972418
Target:  5'- gAACGCGUUGCCGcACcUGUGcccgcGAcGACCg -3'
miRNA:   3'- -UUGUGCAGCGGCaUGuAUAC-----CU-CUGG- -5'
21278 3' -51.1 NC_004778.3 + 4519 0.67 0.972129
Target:  5'- uGCugGUCGgCGUGCAUugcacccAUGGAuugaACCg -3'
miRNA:   3'- uUGugCAGCgGCAUGUA-------UACCUc---UGG- -5'
21278 3' -51.1 NC_004778.3 + 35650 0.67 0.969431
Target:  5'- gAACugGUCGCUGUAauuuaaaacauUAUAUGuAGACUu -3'
miRNA:   3'- -UUGugCAGCGGCAU-----------GUAUACcUCUGG- -5'
21278 3' -51.1 NC_004778.3 + 106154 0.68 0.96278
Target:  5'- cGACGCGUCaUCGUACAUGacguuguuguUGGGcACCa -3'
miRNA:   3'- -UUGUGCAGcGGCAUGUAU----------ACCUcUGG- -5'
21278 3' -51.1 NC_004778.3 + 107667 0.68 0.955182
Target:  5'- cGACGCccguGUCGCgCGacgaaaccuUGCGcGUGGAGGCCg -3'
miRNA:   3'- -UUGUG----CAGCG-GC---------AUGUaUACCUCUGG- -5'
21278 3' -51.1 NC_004778.3 + 28608 0.68 0.951015
Target:  5'- cGugGCGUCGaCGUGCGg--GGAaguGACCa -3'
miRNA:   3'- -UugUGCAGCgGCAUGUauaCCU---CUGG- -5'
21278 3' -51.1 NC_004778.3 + 87114 0.69 0.946597
Target:  5'- uGACACGggcaGCCGcgccaagggcuaUGCcgAUGGAGACa -3'
miRNA:   3'- -UUGUGCag--CGGC------------AUGuaUACCUCUGg -5'
21278 3' -51.1 NC_004778.3 + 16951 0.69 0.931802
Target:  5'- cGCGCG-CGCUGUuCgAUAUGGcGACCa -3'
miRNA:   3'- uUGUGCaGCGGCAuG-UAUACCuCUGG- -5'
21278 3' -51.1 NC_004778.3 + 33183 0.7 0.908439
Target:  5'- uGACGgGcCGCCGUACuuUGUGGAcuucgcgcucGGCCg -3'
miRNA:   3'- -UUGUgCaGCGGCAUGu-AUACCU----------CUGG- -5'
21278 3' -51.1 NC_004778.3 + 33614 0.72 0.814939
Target:  5'- gAGCACGcCGCCGUGC----GGAcGGCCg -3'
miRNA:   3'- -UUGUGCaGCGGCAUGuauaCCU-CUGG- -5'
21278 3' -51.1 NC_004778.3 + 99173 0.72 0.814939
Target:  5'- cGACGCGUUGCCGgGCGUugcGGcacccGGACCg -3'
miRNA:   3'- -UUGUGCAGCGGCaUGUAua-CC-----UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.