miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21278 5' -55.8 NC_004778.3 + 90457 0.66 0.856838
Target:  5'- cUGGCUUgcUACgGCGCCGCC---GUGa -3'
miRNA:   3'- aACCGAGgaAUG-CGCGGCGGuuuCAC- -5'
21278 5' -55.8 NC_004778.3 + 43983 0.66 0.856838
Target:  5'- uUUGGCgcgCCgcccaACGCGCgGCCGgcGGGUa -3'
miRNA:   3'- -AACCGa--GGaa---UGCGCGgCGGU--UUCAc -5'
21278 5' -55.8 NC_004778.3 + 88130 0.66 0.840446
Target:  5'- -gGGCgCUguuaaaaaaUUACGCGCCGCCuggcguGUGa -3'
miRNA:   3'- aaCCGaGG---------AAUGCGCGGCGGuuu---CAC- -5'
21278 5' -55.8 NC_004778.3 + 1559 0.68 0.757719
Target:  5'- -cGGCaugUUCaUGCGCGCCGUCAAcaccuuAGUGa -3'
miRNA:   3'- aaCCG---AGGaAUGCGCGGCGGUU------UCAC- -5'
21278 5' -55.8 NC_004778.3 + 26839 0.7 0.623288
Target:  5'- aUGGCUCC-UACGCGCgCGCUg----- -3'
miRNA:   3'- aACCGAGGaAUGCGCG-GCGGuuucac -5'
21278 5' -55.8 NC_004778.3 + 10261 0.7 0.620123
Target:  5'- uUUGGCacauuuucguguacUCaa-ACGCGCCGCCAGGGUu -3'
miRNA:   3'- -AACCG--------------AGgaaUGCGCGGCGGUUUCAc -5'
21278 5' -55.8 NC_004778.3 + 30328 0.7 0.602208
Target:  5'- --uGCUCuCUUGCGCGUCGUCuucgGAGUGg -3'
miRNA:   3'- aacCGAG-GAAUGCGCGGCGGu---UUCAC- -5'
21278 5' -55.8 NC_004778.3 + 20222 0.71 0.581223
Target:  5'- gUGGcCUCCUUGUGCGCCuGCCGGcAGUu -3'
miRNA:   3'- aACC-GAGGAAUGCGCGG-CGGUU-UCAc -5'
21278 5' -55.8 NC_004778.3 + 442 0.71 0.550052
Target:  5'- gUGGgaCUgcgaUUACGUGCCGCaCGAGGUGa -3'
miRNA:   3'- aACCgaGG----AAUGCGCGGCG-GUUUCAC- -5'
21278 5' -55.8 NC_004778.3 + 10751 0.74 0.4322
Target:  5'- -gGGCUgCCgugUGCGCGCCGCCGu---- -3'
miRNA:   3'- aaCCGA-GGa--AUGCGCGGCGGUuucac -5'
21278 5' -55.8 NC_004778.3 + 97550 0.82 0.136648
Target:  5'- -cGGCuUCCUUGCGCGCCGCCAc---- -3'
miRNA:   3'- aaCCG-AGGAAUGCGCGGCGGUuucac -5'
21278 5' -55.8 NC_004778.3 + 9872 1.05 0.003519
Target:  5'- aUUGGCUCCUUACGCGCCGCCAAAGUGc -3'
miRNA:   3'- -AACCGAGGAAUGCGCGGCGGUUUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.