miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21279 3' -56.3 NC_004778.3 + 110296 0.66 0.884569
Target:  5'- aCUGGCGGu-UGCCGGgGcCUUuugcUGGCCa -3'
miRNA:   3'- cGACCGCCcuGCGGUCgU-GAA----ACUGG- -5'
21279 3' -56.3 NC_004778.3 + 33861 0.66 0.88387
Target:  5'- cGCUGGUGcaucaccGGcACGCCcauccacaaccGGCACUggGACa -3'
miRNA:   3'- -CGACCGC-------CC-UGCGG-----------UCGUGAaaCUGg -5'
21279 3' -56.3 NC_004778.3 + 49988 0.66 0.88034
Target:  5'- cGCgcccGuGCGGGGC-CCAGUGCUUUacggaaacaaaaagcGGCCa -3'
miRNA:   3'- -CGa---C-CGCCCUGcGGUCGUGAAA---------------CUGG- -5'
21279 3' -56.3 NC_004778.3 + 84589 0.66 0.877477
Target:  5'- aCUGGCGGGugacauaaugACGCgCGGuCACgcgGACa -3'
miRNA:   3'- cGACCGCCC----------UGCG-GUC-GUGaaaCUGg -5'
21279 3' -56.3 NC_004778.3 + 68258 0.66 0.877477
Target:  5'- gGUUGGUGGaugcugcguCGCUGGCGCUcgGGCUg -3'
miRNA:   3'- -CGACCGCCcu-------GCGGUCGUGAaaCUGG- -5'
21279 3' -56.3 NC_004778.3 + 121684 0.66 0.877477
Target:  5'- uGCUGGcCGGcGGCGCUuaccucaccuuuAGCGCggcGACg -3'
miRNA:   3'- -CGACC-GCC-CUGCGG------------UCGUGaaaCUGg -5'
21279 3' -56.3 NC_004778.3 + 94843 0.66 0.870163
Target:  5'- uGCcGGUGGGuugcGCGCC-GCACg--GACa -3'
miRNA:   3'- -CGaCCGCCC----UGCGGuCGUGaaaCUGg -5'
21279 3' -56.3 NC_004778.3 + 2557 0.66 0.854892
Target:  5'- -gUGGuCGucGGGCGCgGGCACgucGGCCa -3'
miRNA:   3'- cgACC-GC--CCUGCGgUCGUGaaaCUGG- -5'
21279 3' -56.3 NC_004778.3 + 32400 0.66 0.854892
Target:  5'- gGUUGGCaGGACGCC-GCG-UUUGAa- -3'
miRNA:   3'- -CGACCGcCCUGCGGuCGUgAAACUgg -5'
21279 3' -56.3 NC_004778.3 + 8808 0.66 0.854892
Target:  5'- gGC-GGCGGGcGCGCuCAGCGaa-UGGCg -3'
miRNA:   3'- -CGaCCGCCC-UGCG-GUCGUgaaACUGg -5'
21279 3' -56.3 NC_004778.3 + 121258 0.66 0.846947
Target:  5'- uGC-GGCGGGGucgcucUGCCGGCAC----ACCg -3'
miRNA:   3'- -CGaCCGCCCU------GCGGUCGUGaaacUGG- -5'
21279 3' -56.3 NC_004778.3 + 32277 0.67 0.838804
Target:  5'- cGCUGGcCGGcGGCGCCgugucgggcuGGUGCUUaaaguccaGGCCg -3'
miRNA:   3'- -CGACC-GCC-CUGCGG----------UCGUGAAa-------CUGG- -5'
21279 3' -56.3 NC_004778.3 + 114268 0.67 0.830471
Target:  5'- gGCUGGCGGaGAUGUCGuucaacuuGuCGCUgccgcGACCg -3'
miRNA:   3'- -CGACCGCC-CUGCGGU--------C-GUGAaa---CUGG- -5'
21279 3' -56.3 NC_004778.3 + 33180 0.67 0.80797
Target:  5'- cGCUGaCGGGcCGCC-GUACUUUGuggacuucgcgcucgGCCg -3'
miRNA:   3'- -CGACcGCCCuGCGGuCGUGAAAC---------------UGG- -5'
21279 3' -56.3 NC_004778.3 + 17344 0.67 0.804408
Target:  5'- uGgUGcGCGGGGCGCUAGC----UGACg -3'
miRNA:   3'- -CgAC-CGCCCUGCGGUCGugaaACUGg -5'
21279 3' -56.3 NC_004778.3 + 68588 0.67 0.804408
Target:  5'- gGCggcGGCGGcGGCGgUGGCGCUUaGGCg -3'
miRNA:   3'- -CGa--CCGCC-CUGCgGUCGUGAAaCUGg -5'
21279 3' -56.3 NC_004778.3 + 71495 0.68 0.776923
Target:  5'- cGUUGGCGGaGGaGUCGGCggagGCgUUGGCCa -3'
miRNA:   3'- -CGACCGCC-CUgCGGUCG----UGaAACUGG- -5'
21279 3' -56.3 NC_004778.3 + 40388 0.68 0.776923
Target:  5'- uGCUGGCuGGGaaacgaGCGCC-GCugUUUG-CUg -3'
miRNA:   3'- -CGACCG-CCC------UGCGGuCGugAAACuGG- -5'
21279 3' -56.3 NC_004778.3 + 7156 0.68 0.767486
Target:  5'- gGCgGGCGGcGCGCCgAGCACUagcucgUUGAg- -3'
miRNA:   3'- -CGaCCGCCcUGCGG-UCGUGA------AACUgg -5'
21279 3' -56.3 NC_004778.3 + 13420 0.69 0.738482
Target:  5'- cGCUGGCGaGGgauuACGaCCGGCAUUcgUUGugUu -3'
miRNA:   3'- -CGACCGC-CC----UGC-GGUCGUGA--AACugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.