miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21279 5' -52.7 NC_004778.3 + 127787 0.66 0.974532
Target:  5'- gUGGaCCAAgcagaGGCG-UCGCGGCAUUUUGu -3'
miRNA:   3'- gGCC-GGUU-----UCGCuAGCGUUGUAGGAC- -5'
21279 5' -52.7 NC_004778.3 + 111698 0.66 0.974532
Target:  5'- -aGGCC-GAGCuGUUGCAGCGUCg-- -3'
miRNA:   3'- ggCCGGuUUCGcUAGCGUUGUAGgac -5'
21279 5' -52.7 NC_004778.3 + 12166 0.66 0.974532
Target:  5'- gCGGCUuguuugugauAAGCGGcggCGCGGCAgcggCCUGc -3'
miRNA:   3'- gGCCGGu---------UUCGCUa--GCGUUGUa---GGAC- -5'
21279 5' -52.7 NC_004778.3 + 95182 0.66 0.971748
Target:  5'- -aGGCCGGGGUGGUC-CAggcGCA-CCUGc -3'
miRNA:   3'- ggCCGGUUUCGCUAGcGU---UGUaGGAC- -5'
21279 5' -52.7 NC_004778.3 + 117913 0.66 0.968751
Target:  5'- aCCGaaaCCGAAGCGA-CGCAAUA-CUUGa -3'
miRNA:   3'- -GGCc--GGUUUCGCUaGCGUUGUaGGAC- -5'
21279 5' -52.7 NC_004778.3 + 75815 0.66 0.96844
Target:  5'- aCGGUCAAuuuguugGGCGAcugCGCAGCGUgCa- -3'
miRNA:   3'- gGCCGGUU-------UCGCUa--GCGUUGUAgGac -5'
21279 5' -52.7 NC_004778.3 + 93005 0.66 0.965535
Target:  5'- gCCGGCCGc-GUGAacgCGCAGCAgccCCa- -3'
miRNA:   3'- -GGCCGGUuuCGCUa--GCGUUGUa--GGac -5'
21279 5' -52.7 NC_004778.3 + 48878 0.66 0.962093
Target:  5'- aCGGCCuuGGCGGcacgcgcguaUCGCAcucgucguCAUCCg- -3'
miRNA:   3'- gGCCGGuuUCGCU----------AGCGUu-------GUAGGac -5'
21279 5' -52.7 NC_004778.3 + 80661 0.67 0.952047
Target:  5'- aCaGCCuGAGCGAgcugCGCGACuugggcugcgugcugGUCCUGu -3'
miRNA:   3'- gGcCGGuUUCGCUa---GCGUUG---------------UAGGAC- -5'
21279 5' -52.7 NC_004778.3 + 101173 0.67 0.950357
Target:  5'- cCCGGCaguuuuGAAGCGc-UGCAGCGcUCCUGc -3'
miRNA:   3'- -GGCCGg-----UUUCGCuaGCGUUGU-AGGAC- -5'
21279 5' -52.7 NC_004778.3 + 75339 0.67 0.941313
Target:  5'- -aGGCCAAAGCGGcgGCAACGUa--- -3'
miRNA:   3'- ggCCGGUUUCGCUagCGUUGUAggac -5'
21279 5' -52.7 NC_004778.3 + 53148 0.67 0.941313
Target:  5'- gUGGC---GGCGGUUGCGGCGgggCCUGc -3'
miRNA:   3'- gGCCGguuUCGCUAGCGUUGUa--GGAC- -5'
21279 5' -52.7 NC_004778.3 + 64611 0.67 0.93987
Target:  5'- gCCGGCCucGGCGucgaacguguaguuGUCGgGGCAUUCg- -3'
miRNA:   3'- -GGCCGGuuUCGC--------------UAGCgUUGUAGGac -5'
21279 5' -52.7 NC_004778.3 + 62459 0.68 0.931265
Target:  5'- aUGGUUucgGAAGCGGUCacguGCAGCAUCCc- -3'
miRNA:   3'- gGCCGG---UUUCGCUAG----CGUUGUAGGac -5'
21279 5' -52.7 NC_004778.3 + 111975 0.68 0.931265
Target:  5'- gCGGCCAAAGCG-UCgGCAguACG-CCUc -3'
miRNA:   3'- gGCCGGUUUCGCuAG-CGU--UGUaGGAc -5'
21279 5' -52.7 NC_004778.3 + 45055 0.68 0.924191
Target:  5'- gCGcGCCGAcgagcgcuaccaucAGCGcgCgaGCGGCGUCCUGg -3'
miRNA:   3'- gGC-CGGUU--------------UCGCuaG--CGUUGUAGGAC- -5'
21279 5' -52.7 NC_004778.3 + 98725 0.68 0.914292
Target:  5'- gCCGGCC---GCGGcCGCAGCGUgCUu -3'
miRNA:   3'- -GGCCGGuuuCGCUaGCGUUGUAgGAc -5'
21279 5' -52.7 NC_004778.3 + 73420 0.68 0.914292
Target:  5'- gCUGGgCGcguuGGGCGAUCGC-ACGcCCUGg -3'
miRNA:   3'- -GGCCgGU----UUCGCUAGCGuUGUaGGAC- -5'
21279 5' -52.7 NC_004778.3 + 62621 0.69 0.895055
Target:  5'- gUGGUCGAGGCGGUCGguucagacuuUAACAUCUUc -3'
miRNA:   3'- gGCCGGUUUCGCUAGC----------GUUGUAGGAc -5'
21279 5' -52.7 NC_004778.3 + 28695 0.69 0.881005
Target:  5'- uCCGGCCAAcaauAGCGcUCGCuGCAgCgCUGc -3'
miRNA:   3'- -GGCCGGUU----UCGCuAGCGuUGUaG-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.