miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21280 3' -53.1 NC_004778.3 + 62123 0.66 0.969004
Target:  5'- uGCCGC---CGCCGGCGa--ACAgGUCCu -3'
miRNA:   3'- -UGGCGaaaGCGGCUGCgagUGU-UAGG- -5'
21280 3' -53.1 NC_004778.3 + 95011 0.66 0.969004
Target:  5'- cGCCGUg--CGCCGACGggCAgGugcgCCu -3'
miRNA:   3'- -UGGCGaaaGCGGCUGCgaGUgUua--GG- -5'
21280 3' -53.1 NC_004778.3 + 77369 0.66 0.969004
Target:  5'- cGCCGCg--CGCUGGUGCaaugcgCACGcgCCg -3'
miRNA:   3'- -UGGCGaaaGCGGCUGCGa-----GUGUuaGG- -5'
21280 3' -53.1 NC_004778.3 + 33312 0.66 0.969004
Target:  5'- aGCgUGCaagUUGCCGAUGUaCACAGUCa -3'
miRNA:   3'- -UG-GCGaa-AGCGGCUGCGaGUGUUAGg -5'
21280 3' -53.1 NC_004778.3 + 61070 0.66 0.965823
Target:  5'- aAUCGCgg-CGCCGACugaauGCgCGCuuUCCa -3'
miRNA:   3'- -UGGCGaaaGCGGCUG-----CGaGUGuuAGG- -5'
21280 3' -53.1 NC_004778.3 + 114548 0.66 0.965823
Target:  5'- gGCUGCUgacaaGCCGGCcguuGCUaCGCAAgggCCg -3'
miRNA:   3'- -UGGCGAaag--CGGCUG----CGA-GUGUUa--GG- -5'
21280 3' -53.1 NC_004778.3 + 40167 0.66 0.965823
Target:  5'- uGCuCGC--UCGCCGACGUgccaaaAAUCCu -3'
miRNA:   3'- -UG-GCGaaAGCGGCUGCGagug--UUAGG- -5'
21280 3' -53.1 NC_004778.3 + 55437 0.66 0.965823
Target:  5'- gGCCGCUgcgcgCGCCaGCGaCUCguACAcuUCCa -3'
miRNA:   3'- -UGGCGAaa---GCGGcUGC-GAG--UGUu-AGG- -5'
21280 3' -53.1 NC_004778.3 + 70421 0.66 0.965823
Target:  5'- uGCCGCg---GCCG-CGCaCGCcGUCCa -3'
miRNA:   3'- -UGGCGaaagCGGCuGCGaGUGuUAGG- -5'
21280 3' -53.1 NC_004778.3 + 35039 0.66 0.965823
Target:  5'- cGCCGCUgccgagGUCGACGUgcgCACAAaCUg -3'
miRNA:   3'- -UGGCGAaag---CGGCUGCGa--GUGUUaGG- -5'
21280 3' -53.1 NC_004778.3 + 22555 0.66 0.965823
Target:  5'- cCCGUac-CGCUGGCGCUaaaaACcAUCCa -3'
miRNA:   3'- uGGCGaaaGCGGCUGCGAg---UGuUAGG- -5'
21280 3' -53.1 NC_004778.3 + 20986 0.66 0.962418
Target:  5'- uCUGUUaa-GCCGAgGUcaUCGCGAUCCg -3'
miRNA:   3'- uGGCGAaagCGGCUgCG--AGUGUUAGG- -5'
21280 3' -53.1 NC_004778.3 + 26574 0.66 0.962418
Target:  5'- gGCCGCauagUUGUCGuCGUUCGCA--CCa -3'
miRNA:   3'- -UGGCGaa--AGCGGCuGCGAGUGUuaGG- -5'
21280 3' -53.1 NC_004778.3 + 68297 0.66 0.962418
Target:  5'- -gCGCcgUCGCCGACGUgcgagagUACGG-CCg -3'
miRNA:   3'- ugGCGaaAGCGGCUGCGa------GUGUUaGG- -5'
21280 3' -53.1 NC_004778.3 + 38080 0.66 0.961353
Target:  5'- uGCCGCUgcgGCgCGACGCgcaacagCACGcuagcgcgcacgccGUCCg -3'
miRNA:   3'- -UGGCGAaagCG-GCUGCGa------GUGU--------------UAGG- -5'
21280 3' -53.1 NC_004778.3 + 99020 0.66 0.961353
Target:  5'- uGCCGCaa-CGCCcggcaacgcgucgcGGCGCUCACGcccacaauuUCCa -3'
miRNA:   3'- -UGGCGaaaGCGG--------------CUGCGAGUGUu--------AGG- -5'
21280 3' -53.1 NC_004778.3 + 107485 0.66 0.958785
Target:  5'- uGCCGCUaacgcCGCCGACGUaUGCg--CCg -3'
miRNA:   3'- -UGGCGAaa---GCGGCUGCGaGUGuuaGG- -5'
21280 3' -53.1 NC_004778.3 + 39600 0.66 0.958785
Target:  5'- -aCGCcgUCGCUGAcCGC-CACGgacaGUCCg -3'
miRNA:   3'- ugGCGaaAGCGGCU-GCGaGUGU----UAGG- -5'
21280 3' -53.1 NC_004778.3 + 19877 0.66 0.958785
Target:  5'- -gUGCgucggCGCCGAC-CUCGCAGUgCu -3'
miRNA:   3'- ugGCGaaa--GCGGCUGcGAGUGUUAgG- -5'
21280 3' -53.1 NC_004778.3 + 107917 0.66 0.954918
Target:  5'- cGCCGCccgacgaGCgCGACGCggugCuGCGGUCCa -3'
miRNA:   3'- -UGGCGaaag---CG-GCUGCGa---G-UGUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.