miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21280 3' -53.1 NC_004778.3 + 1897 0.69 0.866617
Target:  5'- aGCCGCUgcaggUuugauuauaacCGCCGGCGCUuugucgaCGCcGUCCa -3'
miRNA:   3'- -UGGCGAa----A-----------GCGGCUGCGA-------GUGuUAGG- -5'
21280 3' -53.1 NC_004778.3 + 8739 0.74 0.649436
Target:  5'- cGCCGCcggCGCCGugGCgcgcCACcccGUCCa -3'
miRNA:   3'- -UGGCGaaaGCGGCugCGa---GUGu--UAGG- -5'
21280 3' -53.1 NC_004778.3 + 9056 0.67 0.937026
Target:  5'- cGCCGCgcucgagCGCCG--GCUCAaugAGUCCg -3'
miRNA:   3'- -UGGCGaaa----GCGGCugCGAGUg--UUAGG- -5'
21280 3' -53.1 NC_004778.3 + 10726 0.74 0.59702
Target:  5'- gACCGCUgUUCGCUGcGCGCUcCGCGGgcugCCg -3'
miRNA:   3'- -UGGCGA-AAGCGGC-UGCGA-GUGUUa---GG- -5'
21280 3' -53.1 NC_004778.3 + 12000 0.73 0.68078
Target:  5'- gGCCGCUgccgCGCCGcCGCuuaUCACAAacaagCCg -3'
miRNA:   3'- -UGGCGAaa--GCGGCuGCG---AGUGUUa----GG- -5'
21280 3' -53.1 NC_004778.3 + 15374 1.13 0.002772
Target:  5'- cACCGCUUUCGCCGACGCUCACAAUCCg -3'
miRNA:   3'- -UGGCGAAAGCGGCUGCGAGUGUUAGG- -5'
21280 3' -53.1 NC_004778.3 + 15413 0.69 0.867382
Target:  5'- cACCGUUggcgcCGCCGAUaucaaagcacuGCUCGCAGcgCCg -3'
miRNA:   3'- -UGGCGAaa---GCGGCUG-----------CGAGUGUUa-GG- -5'
21280 3' -53.1 NC_004778.3 + 19877 0.66 0.958785
Target:  5'- -gUGCgucggCGCCGAC-CUCGCAGUgCu -3'
miRNA:   3'- ugGCGaaa--GCGGCUGcGAGUGUUAgG- -5'
21280 3' -53.1 NC_004778.3 + 20986 0.66 0.962418
Target:  5'- uCUGUUaa-GCCGAgGUcaUCGCGAUCCg -3'
miRNA:   3'- uGGCGAaagCGGCUgCG--AGUGUUAGG- -5'
21280 3' -53.1 NC_004778.3 + 21667 0.69 0.859629
Target:  5'- uGCCGCUuagguUUCgGCCGGCGgUgGCGgcgccAUCCg -3'
miRNA:   3'- -UGGCGA-----AAG-CGGCUGCgAgUGU-----UAGG- -5'
21280 3' -53.1 NC_004778.3 + 22555 0.66 0.965823
Target:  5'- cCCGUac-CGCUGGCGCUaaaaACcAUCCa -3'
miRNA:   3'- uGGCGaaaGCGGCUGCGAg---UGuUAGG- -5'
21280 3' -53.1 NC_004778.3 + 23751 0.7 0.835099
Target:  5'- -gCGCgugCGCCGAUGCUUGCAG-CUa -3'
miRNA:   3'- ugGCGaaaGCGGCUGCGAGUGUUaGG- -5'
21280 3' -53.1 NC_004778.3 + 25905 0.68 0.902707
Target:  5'- gGCaCGCUcgUCGCUgGGCGCUUGCAggCUg -3'
miRNA:   3'- -UG-GCGAa-AGCGG-CUGCGAGUGUuaGG- -5'
21280 3' -53.1 NC_004778.3 + 26068 0.67 0.946463
Target:  5'- cACCGCcgUCGUggccaCGGCGCUguaCAUAAUCg -3'
miRNA:   3'- -UGGCGaaAGCG-----GCUGCGA---GUGUUAGg -5'
21280 3' -53.1 NC_004778.3 + 26574 0.66 0.962418
Target:  5'- gGCCGCauagUUGUCGuCGUUCGCA--CCa -3'
miRNA:   3'- -UGGCGaa--AGCGGCuGCGAGUGUuaGG- -5'
21280 3' -53.1 NC_004778.3 + 27338 0.73 0.700451
Target:  5'- aACCGCcggggacagguugUUguaGuuGGCGCUCACGAUCUg -3'
miRNA:   3'- -UGGCG-------------AAag-CggCUGCGAGUGUUAGG- -5'
21280 3' -53.1 NC_004778.3 + 27817 0.67 0.946463
Target:  5'- gGCCGCU--UGUCG-CGCUCgggGCGGUCa -3'
miRNA:   3'- -UGGCGAaaGCGGCuGCGAG---UGUUAGg -5'
21280 3' -53.1 NC_004778.3 + 31376 0.67 0.937026
Target:  5'- gGCUGCcaaagUGCUGGCGCcgCACAAggCCg -3'
miRNA:   3'- -UGGCGaaa--GCGGCUGCGa-GUGUUa-GG- -5'
21280 3' -53.1 NC_004778.3 + 33312 0.66 0.969004
Target:  5'- aGCgUGCaagUUGCCGAUGUaCACAGUCa -3'
miRNA:   3'- -UG-GCGaa-AGCGGCUGCGaGUGUUAGg -5'
21280 3' -53.1 NC_004778.3 + 33750 0.68 0.920993
Target:  5'- gGuuGUgUUUGCCGGC-CUCcACGGUCCa -3'
miRNA:   3'- -UggCGaAAGCGGCUGcGAG-UGUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.