miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21280 5' -56.7 NC_004778.3 + 74490 0.66 0.867721
Target:  5'- cGGuGCGCgUGUuuuUGGCGCaCGUCGuaagGUAUCa -3'
miRNA:   3'- -CCuCGUG-GCA---ACCGCG-GCGGC----UAUAG- -5'
21280 5' -56.7 NC_004778.3 + 35974 0.66 0.852357
Target:  5'- -aGGCGCuUGUUGGUGCggCGCCGG-GUCg -3'
miRNA:   3'- ccUCGUG-GCAACCGCG--GCGGCUaUAG- -5'
21280 5' -56.7 NC_004778.3 + 63663 0.66 0.852357
Target:  5'- --cGCGuuG-UGGCGCCGCCGc---- -3'
miRNA:   3'- ccuCGUggCaACCGCGGCGGCuauag -5'
21280 5' -56.7 NC_004778.3 + 21156 0.66 0.847589
Target:  5'- gGGAGCGCCGUgauuuUGGUgcguaggguuaaaguGCuCGCCGGn--- -3'
miRNA:   3'- -CCUCGUGGCA-----ACCG---------------CG-GCGGCUauag -5'
21280 5' -56.7 NC_004778.3 + 99182 0.66 0.844371
Target:  5'- uGAGCGCCGcgacGCGuuGCCGGg--- -3'
miRNA:   3'- cCUCGUGGCaac-CGCggCGGCUauag -5'
21280 5' -56.7 NC_004778.3 + 56908 0.66 0.844371
Target:  5'- cGGAGCGUCGUccGCGCUGCUGGc--- -3'
miRNA:   3'- -CCUCGUGGCAacCGCGGCGGCUauag -5'
21280 5' -56.7 NC_004778.3 + 118115 0.66 0.844371
Target:  5'- aGGAGUuugacaaaAUCGgcGGCGgCGCCGGU-UCu -3'
miRNA:   3'- -CCUCG--------UGGCaaCCGCgGCGGCUAuAG- -5'
21280 5' -56.7 NC_004778.3 + 4647 0.66 0.841937
Target:  5'- -aGGCACCuUaaagcauaucagccUGGUGCCGUCGAUAa- -3'
miRNA:   3'- ccUCGUGGcA--------------ACCGCGGCGGCUAUag -5'
21280 5' -56.7 NC_004778.3 + 28843 0.66 0.83619
Target:  5'- cGAGCGCUauuGUUGGCcggacggcaGUCGCuuuCGAUGUCg -3'
miRNA:   3'- cCUCGUGG---CAACCG---------CGGCG---GCUAUAG- -5'
21280 5' -56.7 NC_004778.3 + 81451 0.67 0.819275
Target:  5'- aGGGGCAaucc--GCGCCGCCGugcGUGUCu -3'
miRNA:   3'- -CCUCGUggcaacCGCGGCGGC---UAUAG- -5'
21280 5' -56.7 NC_004778.3 + 39427 0.67 0.819275
Target:  5'- uGAGCACC---GGCGCCgcuuuGCCGAcUAUUg -3'
miRNA:   3'- cCUCGUGGcaaCCGCGG-----CGGCU-AUAG- -5'
21280 5' -56.7 NC_004778.3 + 92807 0.67 0.819275
Target:  5'- cGGAGCGCCca--GCGCCguuuGCCGAaacagcaauuUAUCg -3'
miRNA:   3'- -CCUCGUGGcaacCGCGG----CGGCU----------AUAG- -5'
21280 5' -56.7 NC_004778.3 + 32439 0.67 0.808793
Target:  5'- -aAGCACCagcccgacacGGCGCCGCCGGc--- -3'
miRNA:   3'- ccUCGUGGcaa-------CCGCGGCGGCUauag -5'
21280 5' -56.7 NC_004778.3 + 61793 0.67 0.783458
Target:  5'- --cGCGgCGUUGGCGCgCGCUGGc--- -3'
miRNA:   3'- ccuCGUgGCAACCGCG-GCGGCUauag -5'
21280 5' -56.7 NC_004778.3 + 113899 0.68 0.764692
Target:  5'- cGGGCGaaGgcGGCGCCGCgGGUuccUCg -3'
miRNA:   3'- cCUCGUggCaaCCGCGGCGgCUAu--AG- -5'
21280 5' -56.7 NC_004778.3 + 106359 0.68 0.755127
Target:  5'- aGGGGCACCGcaaaGccaacaccgccGCGCCGuaGAUGUCc -3'
miRNA:   3'- -CCUCGUGGCaa--C-----------CGCGGCggCUAUAG- -5'
21280 5' -56.7 NC_004778.3 + 8890 0.68 0.735678
Target:  5'- uGGcGCGCCac-GGCGCCGgCGGcGUCa -3'
miRNA:   3'- -CCuCGUGGcaaCCGCGGCgGCUaUAG- -5'
21280 5' -56.7 NC_004778.3 + 32283 0.69 0.68563
Target:  5'- uGGAGCGCCGUcgugcaGGCGCUGaaggaCGAa--- -3'
miRNA:   3'- -CCUCGUGGCAa-----CCGCGGCg----GCUauag -5'
21280 5' -56.7 NC_004778.3 + 10750 0.7 0.665235
Target:  5'- cGGGCuGCCGUgUGcGCGCCGCCGuaaacgccAUCg -3'
miRNA:   3'- cCUCG-UGGCA-AC-CGCGGCGGCua------UAG- -5'
21280 5' -56.7 NC_004778.3 + 98370 0.7 0.659092
Target:  5'- uGGAcuGCAucgaaucguuuuuguCCuuGUUGGCGUCGCCGGUGUg -3'
miRNA:   3'- -CCU--CGU---------------GG--CAACCGCGGCGGCUAUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.