miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21282 3' -48.9 NC_004778.3 + 50145 0.66 0.997752
Target:  5'- uAACACGU--ACGGaaugCGAucGCcGUUGCCg -3'
miRNA:   3'- -UUGUGCAuaUGCCa---GUU--CGaCAACGG- -5'
21282 3' -48.9 NC_004778.3 + 43390 0.66 0.997752
Target:  5'- cACGCGUAcguuuUGCGG-CAGGC-GUgcgaGCCg -3'
miRNA:   3'- uUGUGCAU-----AUGCCaGUUCGaCAa---CGG- -5'
21282 3' -48.9 NC_004778.3 + 2199 0.66 0.997311
Target:  5'- gAACGCGgcUGCGGU--GGCg---GCCg -3'
miRNA:   3'- -UUGUGCauAUGCCAguUCGacaaCGG- -5'
21282 3' -48.9 NC_004778.3 + 5621 0.66 0.996801
Target:  5'- uACACGUuggccAUGG-CAGGCgcgcaGUUGCCu -3'
miRNA:   3'- uUGUGCAua---UGCCaGUUCGa----CAACGG- -5'
21282 3' -48.9 NC_004778.3 + 63489 0.66 0.996801
Target:  5'- cGGCGCGg--GCGGauUCGGGCUcaUGCUg -3'
miRNA:   3'- -UUGUGCauaUGCC--AGUUCGAcaACGG- -5'
21282 3' -48.9 NC_004778.3 + 73563 0.66 0.996213
Target:  5'- aGAC-CGUcgACGGUgAAGCacagcaUGUUGUCc -3'
miRNA:   3'- -UUGuGCAuaUGCCAgUUCG------ACAACGG- -5'
21282 3' -48.9 NC_004778.3 + 18409 0.66 0.996213
Target:  5'- uAC-CGUGUcccacAUGGUgGGGCUGUUggGCCa -3'
miRNA:   3'- uUGuGCAUA-----UGCCAgUUCGACAA--CGG- -5'
21282 3' -48.9 NC_004778.3 + 35359 0.66 0.996213
Target:  5'- cGACACGgcggGCGccaaaGUCAAGCUGcguUUGCa -3'
miRNA:   3'- -UUGUGCaua-UGC-----CAGUUCGAC---AACGg -5'
21282 3' -48.9 NC_004778.3 + 28457 0.67 0.994772
Target:  5'- -uCAUGUuaAUAUGGUCcAGCUGcUGCg -3'
miRNA:   3'- uuGUGCA--UAUGCCAGuUCGACaACGg -5'
21282 3' -48.9 NC_004778.3 + 1742 0.67 0.9939
Target:  5'- aAACACgGUGUACGGcgUAAGCUccagcaUGCCc -3'
miRNA:   3'- -UUGUG-CAUAUGCCa-GUUCGAca----ACGG- -5'
21282 3' -48.9 NC_004778.3 + 36450 0.67 0.992915
Target:  5'- gGAUACGUAUuacgGCGGUguGGUgGgcGCCa -3'
miRNA:   3'- -UUGUGCAUA----UGCCAguUCGaCaaCGG- -5'
21282 3' -48.9 NC_004778.3 + 128179 0.67 0.991807
Target:  5'- gGGCuGCGUGUGCGG-CugcAGUUGUUGUg -3'
miRNA:   3'- -UUG-UGCAUAUGCCaGu--UCGACAACGg -5'
21282 3' -48.9 NC_004778.3 + 22180 0.67 0.991807
Target:  5'- uGCugGUAgugAUGGUgUAGGUgagGUUGCCc -3'
miRNA:   3'- uUGugCAUa--UGCCA-GUUCGa--CAACGG- -5'
21282 3' -48.9 NC_004778.3 + 29705 0.67 0.990566
Target:  5'- -uCACGUAUaACGG-CGcGCUcauGUUGCCa -3'
miRNA:   3'- uuGUGCAUA-UGCCaGUuCGA---CAACGG- -5'
21282 3' -48.9 NC_004778.3 + 93050 0.68 0.989182
Target:  5'- cGACGcCGgcucgcUGCGGcUCAAGCUGgacGCCg -3'
miRNA:   3'- -UUGU-GCau----AUGCC-AGUUCGACaa-CGG- -5'
21282 3' -48.9 NC_004778.3 + 69197 0.68 0.98407
Target:  5'- aAACACGg---UGGUguAGUUGUUGCUa -3'
miRNA:   3'- -UUGUGCauauGCCAguUCGACAACGG- -5'
21282 3' -48.9 NC_004778.3 + 104016 0.68 0.982011
Target:  5'- uGCGCGUGUugGGguccagCGAGCcgccGUUGUa -3'
miRNA:   3'- uUGUGCAUAugCCa-----GUUCGa---CAACGg -5'
21282 3' -48.9 NC_004778.3 + 52199 0.69 0.974637
Target:  5'- cGCGCGUcguCGGUUAcgcAGUUGUUGCg -3'
miRNA:   3'- uUGUGCAuauGCCAGU---UCGACAACGg -5'
21282 3' -48.9 NC_004778.3 + 80599 0.7 0.962046
Target:  5'- gAGCACGUGgcacauucguugcgcGCGGUgcGGCUGgcGCCg -3'
miRNA:   3'- -UUGUGCAUa--------------UGCCAguUCGACaaCGG- -5'
21282 3' -48.9 NC_004778.3 + 121954 0.71 0.944714
Target:  5'- aGGCGCGUGUuguCGGUCAAGaagGUgGCUu -3'
miRNA:   3'- -UUGUGCAUAu--GCCAGUUCga-CAaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.