miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21282 5' -52.7 NC_004778.3 + 39169 0.66 0.969204
Target:  5'- cGGuGCGcACGAccACCGCGUCGcccGCUa -3'
miRNA:   3'- aCC-CGU-UGCUaaUGGCGUAGCa--CGAc -5'
21282 5' -52.7 NC_004778.3 + 387 0.66 0.96255
Target:  5'- gUGGGUAugaacaACGAaUACCGCAUCagcCUGg -3'
miRNA:   3'- -ACCCGU------UGCUaAUGGCGUAGcacGAC- -5'
21282 5' -52.7 NC_004778.3 + 77900 0.66 0.961472
Target:  5'- cGGGCAcaAUGAUaaacagucgcucggUGCgCGCGggUGUGCUGa -3'
miRNA:   3'- aCCCGU--UGCUA--------------AUG-GCGUa-GCACGAC- -5'
21282 5' -52.7 NC_004778.3 + 89894 0.66 0.958874
Target:  5'- gUGGGCGcaaGCGGcUUGCgCGCGUUGUuguaaaaauGCUGc -3'
miRNA:   3'- -ACCCGU---UGCU-AAUG-GCGUAGCA---------CGAC- -5'
21282 5' -52.7 NC_004778.3 + 89340 0.66 0.958874
Target:  5'- gUGGGC--CGAUUGCCGaCGUCGcuuUGUg- -3'
miRNA:   3'- -ACCCGuuGCUAAUGGC-GUAGC---ACGac -5'
21282 5' -52.7 NC_004778.3 + 9009 0.66 0.958874
Target:  5'- uUGGGCGGCGG--GCUGCAUuUGUcGCa- -3'
miRNA:   3'- -ACCCGUUGCUaaUGGCGUA-GCA-CGac -5'
21282 5' -52.7 NC_004778.3 + 37816 0.66 0.958493
Target:  5'- uUGGGCGucucaaacagcgcGCGGcgACaCGCGUgGUGCUu -3'
miRNA:   3'- -ACCCGU-------------UGCUaaUG-GCGUAgCACGAc -5'
21282 5' -52.7 NC_004778.3 + 22751 0.66 0.954552
Target:  5'- -uGGCAACGAgcacuuuUUGCCGCGccacuUUGUGCc- -3'
miRNA:   3'- acCCGUUGCU-------AAUGGCGU-----AGCACGac -5'
21282 5' -52.7 NC_004778.3 + 53282 0.66 0.950794
Target:  5'- -cGGCGGCGGUUGCUGUggCGgcgGUUGn -3'
miRNA:   3'- acCCGUUGCUAAUGGCGuaGCa--CGAC- -5'
21282 5' -52.7 NC_004778.3 + 112214 0.67 0.941718
Target:  5'- aUGGGCGuagACGAcgUGcCCGCGUucaaCGUGCg- -3'
miRNA:   3'- -ACCCGU---UGCUa-AU-GGCGUA----GCACGac -5'
21282 5' -52.7 NC_004778.3 + 94679 0.67 0.936799
Target:  5'- cGGGCGAaucgUACUGCuUCGcGCUGa -3'
miRNA:   3'- aCCCGUUgcuaAUGGCGuAGCaCGAC- -5'
21282 5' -52.7 NC_004778.3 + 56901 0.68 0.920494
Target:  5'- cGGGCAACGGa----GCGUCGUccgcGCUGc -3'
miRNA:   3'- aCCCGUUGCUaauggCGUAGCA----CGAC- -5'
21282 5' -52.7 NC_004778.3 + 70007 0.68 0.920494
Target:  5'- cUGGGCAGCGAcgccauucugGCgCGCAUcCGUcuggaGCUGg -3'
miRNA:   3'- -ACCCGUUGCUaa--------UG-GCGUA-GCA-----CGAC- -5'
21282 5' -52.7 NC_004778.3 + 85559 0.68 0.918735
Target:  5'- gUGGGCGACGugUACgGCGUCGcccacgcgggcguuUGCg- -3'
miRNA:   3'- -ACCCGUUGCuaAUGgCGUAGC--------------ACGac -5'
21282 5' -52.7 NC_004778.3 + 52427 0.68 0.914542
Target:  5'- cUGGaGCAGCGGUUGCgGCAgguggCGaauaugugGCUGu -3'
miRNA:   3'- -ACC-CGUUGCUAAUGgCGUa----GCa-------CGAC- -5'
21282 5' -52.7 NC_004778.3 + 105976 0.68 0.913321
Target:  5'- -uGGCAACGAcgucccacguCCGCAUgGUGUUGu -3'
miRNA:   3'- acCCGUUGCUaau-------GGCGUAgCACGAC- -5'
21282 5' -52.7 NC_004778.3 + 95251 0.68 0.908335
Target:  5'- cGGGCAuggugcgccGCGGcgACCGCAcCGUcGCUa -3'
miRNA:   3'- aCCCGU---------UGCUaaUGGCGUaGCA-CGAc -5'
21282 5' -52.7 NC_004778.3 + 14863 0.68 0.901872
Target:  5'- cGGGCAccuCGAaugcaaacGCCGCGUCcGUGUUGc -3'
miRNA:   3'- aCCCGUu--GCUaa------UGGCGUAG-CACGAC- -5'
21282 5' -52.7 NC_004778.3 + 39025 0.68 0.895158
Target:  5'- cGGGCGACaagcaaAUUugCGCGUgCGUGCc- -3'
miRNA:   3'- aCCCGUUGc-----UAAugGCGUA-GCACGac -5'
21282 5' -52.7 NC_004778.3 + 97368 0.69 0.888195
Target:  5'- uUGGGCAucGCGuauuugcugACCGCcAUCGUGUg- -3'
miRNA:   3'- -ACCCGU--UGCuaa------UGGCG-UAGCACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.