miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 100073 0.72 0.654193
Target:  5'- gCGcCAGCGUCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 100007 0.72 0.643967
Target:  5'- gCGUCAGCGUCGACCcUGCcUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 49070 0.72 0.643967
Target:  5'- ----uGCGCCGACCUCGUguucgagUCGGa -3'
miRNA:   3'- gcaguCGCGGCUGGAGCGaaa----AGCCc -5'
21283 3' -55.4 NC_004778.3 + 124870 0.71 0.684731
Target:  5'- gCGUCAuCGCCGACCcCGCUUUcCGa- -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAaGCcc -5'
21283 3' -55.4 NC_004778.3 + 44159 0.71 0.694835
Target:  5'- gGUCAGCcguuaaauacccGCCGGCCgCGCg--UUGGGc -3'
miRNA:   3'- gCAGUCG------------CGGCUGGaGCGaaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 84214 0.7 0.724796
Target:  5'- uGUCAaacGCGCUGACUaCGCUcgacUCGGGc -3'
miRNA:   3'- gCAGU---CGCGGCUGGaGCGAaa--AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 44474 0.7 0.754038
Target:  5'- uCG-CGGCGCCGcuCgUCGCUgg-CGGGc -3'
miRNA:   3'- -GCaGUCGCGGCu-GgAGCGAaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 971 0.69 0.809375
Target:  5'- uCGUCGGCGUCGAUCggCGCagcagCGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGa-GCGaaaa-GCCc -5'
21283 3' -55.4 NC_004778.3 + 113906 0.68 0.834991
Target:  5'- aGgCGGCGCCGcggguuCCUCGCUcg-CGGa -3'
miRNA:   3'- gCaGUCGCGGCu-----GGAGCGAaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 48932 0.68 0.858948
Target:  5'- gGUCGGCGCaauuguaGAagcCCUCGCcca-CGGGg -3'
miRNA:   3'- gCAGUCGCGg------CU---GGAGCGaaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 95635 0.68 0.84317
Target:  5'- aCGcCGGUGCCGGCCaacgaaauuUCGgUcacgUCGGGg -3'
miRNA:   3'- -GCaGUCGCGGCUGG---------AGCgAaa--AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66764 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 125349 0.68 0.818085
Target:  5'- ---gGGCGCCGACCUCGUgaa--GGu -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGaaaagCCc -5'
21283 3' -55.4 NC_004778.3 + 19890 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 95155 0.67 0.873906
Target:  5'- cCGUCGGCGCaCGGCg-CGCg---CGGa -3'
miRNA:   3'- -GCAGUCGCG-GCUGgaGCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 12732 0.67 0.873906
Target:  5'- uGUCGuaaugugccGCGCCGAUUcCGCUg-UCGGGc -3'
miRNA:   3'- gCAGU---------CGCGGCUGGaGCGAaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 89338 0.67 0.873906
Target:  5'- cCGUgGGCcgauuGCCGACgUCGCUUUgUGGu -3'
miRNA:   3'- -GCAgUCG-----CGGCUGgAGCGAAAaGCCc -5'
21283 3' -55.4 NC_004778.3 + 112653 0.67 0.881062
Target:  5'- ----uGCGUC-ACCUUGUUUUUCGGGu -3'
miRNA:   3'- gcaguCGCGGcUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 54242 0.67 0.881062
Target:  5'- uGUCGGCGCUuuggGACCgcgUCGCUUgcgUCGc- -3'
miRNA:   3'- gCAGUCGCGG----CUGG---AGCGAAa--AGCcc -5'
21283 3' -55.4 NC_004778.3 + 114531 0.67 0.881062
Target:  5'- cCGUUgcuacgcaAGgGCCGGCCUCGCccg-CGGc -3'
miRNA:   3'- -GCAG--------UCgCGGCUGGAGCGaaaaGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.