Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 66907 | 0.82 | 0.185846 |
Target: 5'- gCGUCAGgGCCGACCUUGCUUUUUa-- -3' miRNA: 3'- -GCAGUCgCGGCUGGAGCGAAAAGccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 20021 | 0.82 | 0.187718 |
Target: 5'- gGUCGGCGCCGACgcaCguuuaaagauagcacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 19879 | 0.82 | 0.190556 |
Target: 5'- gCGUCGGCGCCGACCUCGCa------- -3' miRNA: 3'- -GCAGUCGCGGCUGGAGCGaaaagccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 124932 | 0.82 | 0.200291 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 124810 | 0.82 | 0.200291 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUa--- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 66491 | 0.8 | 0.237822 |
Target: 5'- gCGUCGGCGCCGAUC-CGUUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99941 | 0.79 | 0.281062 |
Target: 5'- gCGUCAGCGUCGACCcUGCUUUUUGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99601 | 0.78 | 0.318518 |
Target: 5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 122808 | 0.77 | 0.35094 |
Target: 5'- gGUCGGCGCUGACgcacguuuauagcaCUCGCUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 122760 | 0.77 | 0.35094 |
Target: 5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 122698 | 0.77 | 0.35094 |
Target: 5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99667 | 0.77 | 0.36439 |
Target: 5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99809 | 0.76 | 0.394027 |
Target: 5'- gCGcCAGCGCCGACCcUGCUUUUUGa- -3' miRNA: 3'- -GCaGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 122930 | 0.76 | 0.402532 |
Target: 5'- gCGUCAGCGCCGACUcCaCUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGcGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 24556 | 0.76 | 0.411153 |
Target: 5'- gCGUCAaCGCCGACCgUGCUUUUCuGGu -3' miRNA: 3'- -GCAGUcGCGGCUGGaGCGAAAAGcCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99404 | 0.76 | 0.419887 |
Target: 5'- gCGUCAGCG-CGACCUCGCUUUa---- -3' miRNA: 3'- -GCAGUCGCgGCUGGAGCGAAAagccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 66959 | 0.76 | 0.432302 |
Target: 5'- gGUCGGCGCCGACgcacguaagauagcaCUCGUUUUUCGc- -3' miRNA: 3'- gCAGUCGCGGCUG---------------GAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 52984 | 0.74 | 0.49354 |
Target: 5'- -aUCAGCGCCGGCaUgGCg--UCGGGg -3' miRNA: 3'- gcAGUCGCGGCUGgAgCGaaaAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 125075 | 0.73 | 0.56953 |
Target: 5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 124953 | 0.73 | 0.56953 |
Target: 5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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