miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 122186 0.86 0.114121
Target:  5'- aG-CAGCGCCGACCUUGCUUUUCGa- -3'
miRNA:   3'- gCaGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66754 0.87 0.090017
Target:  5'- gCGUCGGCGCCGACCUCaCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGcGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99639 0.88 0.083116
Target:  5'- gCGUCAGCGCCGACCcUGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122246 0.88 0.076721
Target:  5'- --aCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- gcaGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24424 0.88 0.076516
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUucgaguaCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAA-------GCCC- -5'
21283 3' -55.4 NC_004778.3 + 123131 0.89 0.065318
Target:  5'- gCGUCGGCGCCaACCcCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGcUGGaGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 24489 0.91 0.054076
Target:  5'- gGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUGGAGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122462 0.91 0.052632
Target:  5'- gCGUCGGCGCCGACCUUGCUUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24225 0.91 0.052632
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24027 0.91 0.052632
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 23961 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 24159 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 24357 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 66817 0.91 0.048521
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUUa-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 24093 0.92 0.042354
Target:  5'- gCGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24291 0.92 0.042354
Target:  5'- gCGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122147 0.93 0.040107
Target:  5'- gCGUCAGCGCCGACCUUGCUUUUCa-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 122618 0.96 0.025884
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCu-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 122498 0.96 0.023836
Target:  5'- ---aAGCGCCGACCUCGCUUUUCGGGa -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66688 0.98 0.016661
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.