miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 66764 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66817 0.91 0.048521
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUUa-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 66830 0.82 0.185381
Target:  5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66896 0.82 0.185381
Target:  5'- gGUCGGCGCCGAcgcacguCCaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCU-------GG-----------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66907 0.82 0.185846
Target:  5'- gCGUCAGgGCCGACCUUGCUUUUUa-- -3'
miRNA:   3'- -GCAGUCgCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 66959 0.76 0.432302
Target:  5'- gGUCGGCGCCGACgcacguaagauagcaCUCGUUUUUCGc- -3'
miRNA:   3'- gCAGUCGCGGCUG---------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 67019 0.83 0.158478
Target:  5'- --aCGGCGCCGACgccuaaagauagcaCUCGCUUUUCGGGu -3'
miRNA:   3'- gcaGUCGCGGCUG--------------GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 83226 0.66 0.924758
Target:  5'- -uUCAGCGgCGGCCa-GCUgcaCGGGc -3'
miRNA:   3'- gcAGUCGCgGCUGGagCGAaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 84214 0.7 0.724796
Target:  5'- uGUCAaacGCGCUGACUaCGCUcgacUCGGGc -3'
miRNA:   3'- gCAGU---CGCGGCUGGaGCGAaa--AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 89338 0.67 0.873906
Target:  5'- cCGUgGGCcgauuGCCGACgUCGCUUUgUGGu -3'
miRNA:   3'- -GCAgUCG-----CGGCUGgAGCGAAAaGCCc -5'
21283 3' -55.4 NC_004778.3 + 90813 0.66 0.907435
Target:  5'- aCG-CAGCGUCGACCgCGCUgacguugaCGGc -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAaaa-----GCCc -5'
21283 3' -55.4 NC_004778.3 + 95155 0.67 0.873906
Target:  5'- cCGUCGGCGCaCGGCg-CGCg---CGGa -3'
miRNA:   3'- -GCAGUCGCG-GCUGgaGCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 95210 0.67 0.873906
Target:  5'- cCGgaagUAGCGCCGAUaguaCUCGUUgaggcCGGGg -3'
miRNA:   3'- -GCa---GUCGCGGCUG----GAGCGAaaa--GCCC- -5'
21283 3' -55.4 NC_004778.3 + 95635 0.68 0.84317
Target:  5'- aCGcCGGUGCCGGCCaacgaaauuUCGgUcacgUCGGGg -3'
miRNA:   3'- -GCaGUCGCGGCUGG---------AGCgAaa--AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99404 0.76 0.419887
Target:  5'- gCGUCAGCG-CGACCUCGCUUUa---- -3'
miRNA:   3'- -GCAGUCGCgGCUGGAGCGAAAagccc -5'
21283 3' -55.4 NC_004778.3 + 99515 1.09 0.00353
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99573 0.84 0.136909
Target:  5'- gCGUgAGCGCCGACCUCGCUUUcCGa- -3'
miRNA:   3'- -GCAgUCGCGGCUGGAGCGAAAaGCcc -5'
21283 3' -55.4 NC_004778.3 + 99601 0.78 0.318518
Target:  5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99639 0.88 0.083116
Target:  5'- gCGUCAGCGCCGACCcUGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99667 0.77 0.36439
Target:  5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.