Results 81 - 94 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 122618 | 0.96 | 0.025884 |
Target: 5'- gCGUCAGCGCCGACCUCGCUUUUCu-- -3' miRNA: 3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 122666 | 1.1 | 0.002749 |
Target: 5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3' miRNA: 3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 122698 | 0.77 | 0.35094 |
Target: 5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 122760 | 0.77 | 0.35094 |
Target: 5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 122808 | 0.77 | 0.35094 |
Target: 5'- gGUCGGCGCUGACgcacguuuauagcaCUCGCUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 122930 | 0.76 | 0.402532 |
Target: 5'- gCGUCAGCGCCGACUcCaCUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGcGAAAAGCcc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 123050 | 0.66 | 0.901188 |
Target: 5'- uGUUgguGGCGCCGACCcCGCUUUcCa-- -3' miRNA: 3'- gCAG---UCGCGGCUGGaGCGAAAaGccc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 123131 | 0.89 | 0.065318 |
Target: 5'- gCGUCGGCGCCaACCcCGCUUUUCGGGu -3' miRNA: 3'- -GCAGUCGCGGcUGGaGCGAAAAGCCC- -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 124810 | 0.82 | 0.200291 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUa--- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 124870 | 0.71 | 0.684731 |
Target: 5'- gCGUCAuCGCCGACCcCGCUUUcCGa- -3' miRNA: 3'- -GCAGUcGCGGCUGGaGCGAAAaGCcc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 124932 | 0.82 | 0.200291 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 124953 | 0.73 | 0.56953 |
Target: 5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 125075 | 0.73 | 0.56953 |
Target: 5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3' miRNA: 3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5' |
|||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 125349 | 0.68 | 0.818085 |
Target: 5'- ---gGGCGCCGACCUCGUgaa--GGu -3' miRNA: 3'- gcagUCGCGGCUGGAGCGaaaagCCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home