miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 122186 0.86 0.114121
Target:  5'- aG-CAGCGCCGACCUUGCUUUUCGa- -3'
miRNA:   3'- gCaGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122147 0.93 0.040107
Target:  5'- gCGUCAGCGCCGACCUUGCUUUUCa-- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 114531 0.67 0.881062
Target:  5'- cCGUUgcuacgcaAGgGCCGGCCUCGCccg-CGGc -3'
miRNA:   3'- -GCAG--------UCgCGGCUGGAGCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 113906 0.68 0.834991
Target:  5'- aGgCGGCGCCGcggguuCCUCGCUcg-CGGa -3'
miRNA:   3'- gCaGUCGCGGCu-----GGAGCGAaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 112653 0.67 0.881062
Target:  5'- ----uGCGUC-ACCUUGUUUUUCGGGu -3'
miRNA:   3'- gcaguCGCGGcUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 100664 0.66 0.913447
Target:  5'- uGUCGGCGUCGcgcuCCcCGUUgccaagagUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCu---GGaGCGAaa------AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 100073 0.72 0.654193
Target:  5'- gCGcCAGCGUCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 100007 0.72 0.643967
Target:  5'- gCGUCAGCGUCGACCcUGCcUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99941 0.79 0.281062
Target:  5'- gCGUCAGCGUCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99930 0.66 0.901188
Target:  5'- gGUCgacgcuGGCGCaUGucuaaaaauaGCaCUCGCUUUUCGGGu -3'
miRNA:   3'- gCAG------UCGCG-GC----------UG-GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99864 0.66 0.909869
Target:  5'- gGUCGaCGCUGACgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUcGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99809 0.76 0.394027
Target:  5'- gCGcCAGCGCCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99743 0.84 0.144151
Target:  5'- gCGUCAGCGCCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99733 0.66 0.901188
Target:  5'- gGUCgacgcuGGCGCaUGuuuaaaaauaGCaCUCGCUUUUCGGGu -3'
miRNA:   3'- gCAG------UCGCG-GC----------UG-GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99667 0.77 0.36439
Target:  5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99639 0.88 0.083116
Target:  5'- gCGUCAGCGCCGACCcUGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99601 0.78 0.318518
Target:  5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99573 0.84 0.136909
Target:  5'- gCGUgAGCGCCGACCUCGCUUUcCGa- -3'
miRNA:   3'- -GCAgUCGCGGCUGGAGCGAAAaGCcc -5'
21283 3' -55.4 NC_004778.3 + 99515 1.09 0.00353
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99404 0.76 0.419887
Target:  5'- gCGUCAGCG-CGACCUCGCUUUa---- -3'
miRNA:   3'- -GCAGUCGCgGCUGGAGCGAAAagccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.