miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 24159 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 100007 0.72 0.643967
Target:  5'- gCGUCAGCGUCGACCcUGCcUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24556 0.76 0.411153
Target:  5'- gCGUCAaCGCCGACCgUGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 122760 0.77 0.35094
Target:  5'- gGUCGGCGCUGACgcacgucuauagcaCUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 20021 0.82 0.187718
Target:  5'- gGUCGGCGCCGACgcaCguuuaaagauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 24291 0.92 0.042354
Target:  5'- gCGUCAGCGCCGACCUCGCgUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 23961 0.91 0.051225
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGcCC- -5'
21283 3' -55.4 NC_004778.3 + 24225 0.91 0.052632
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 24424 0.88 0.076516
Target:  5'- gCGUCAGCGCCGACCgCGCUUUUucgaguaCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAA-------GCCC- -5'
21283 3' -55.4 NC_004778.3 + 99743 0.84 0.144151
Target:  5'- gCGUCAGCGCCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99515 1.09 0.00353
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66491 0.8 0.237822
Target:  5'- gCGUCGGCGCCGAUC-CGUUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99601 0.78 0.318518
Target:  5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99667 0.77 0.36439
Target:  5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 124932 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 19968 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 971 0.69 0.809375
Target:  5'- uCGUCGGCGUCGAUCggCGCagcagCGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGa-GCGaaaa-GCCc -5'
21283 3' -55.4 NC_004778.3 + 19913 0.98 0.016661
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 66688 0.98 0.016661
Target:  5'- gCGUCGGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 122498 0.96 0.023836
Target:  5'- ---aAGCGCCGACCUCGCUUUUCGGGa -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGAAAAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.