miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 66622 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19813 1 0.013733
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19968 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 19748 1.1 0.002906
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 122666 1.1 0.002749
Target:  5'- gCGUCAGCGCCGACCUCGCUUUUCGGGu -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66907 0.82 0.185846
Target:  5'- gCGUCAGgGCCGACCUUGCUUUUUa-- -3'
miRNA:   3'- -GCAGUCgCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 19879 0.82 0.190556
Target:  5'- gCGUCGGCGCCGACCUCGCa------- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaaaagccc -5'
21283 3' -55.4 NC_004778.3 + 124810 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUa--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 83226 0.66 0.924758
Target:  5'- -uUCAGCGgCGGCCa-GCUgcaCGGGc -3'
miRNA:   3'- gcAGUCGCgGCUGGagCGAaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 64778 0.66 0.919222
Target:  5'- --aCGGCGCCGaugGCCaauaUGCUUgUUCGGGc -3'
miRNA:   3'- gcaGUCGCGGC---UGGa---GCGAA-AAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 21089 0.66 0.919222
Target:  5'- gCGUCAGCGCgGugCagccCGCggagCGGa -3'
miRNA:   3'- -GCAGUCGCGgCugGa---GCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 100664 0.66 0.913447
Target:  5'- uGUCGGCGUCGcgcuCCcCGUUgccaagagUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCu---GGaGCGAaa------AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99864 0.66 0.909869
Target:  5'- gGUCGaCGCUGACgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUcGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99930 0.66 0.901188
Target:  5'- gGUCgacgcuGGCGCaUGucuaaaaauaGCaCUCGCUUUUCGGGu -3'
miRNA:   3'- gCAG------UCGCG-GC----------UG-GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99733 0.66 0.901188
Target:  5'- gGUCgacgcuGGCGCaUGuuuaaaaauaGCaCUCGCUUUUCGGGu -3'
miRNA:   3'- gCAG------UCGCG-GC----------UG-GAGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 124870 0.71 0.684731
Target:  5'- gCGUCAuCGCCGACCcCGCUUUcCGa- -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAaGCcc -5'
21283 3' -55.4 NC_004778.3 + 99667 0.77 0.36439
Target:  5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99601 0.78 0.318518
Target:  5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66491 0.8 0.237822
Target:  5'- gCGUCGGCGCCGAUC-CGUUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 124932 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.