Results 81 - 94 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21283 | 3' | -55.4 | NC_004778.3 | + | 21089 | 0.66 | 0.919222 |
Target: 5'- gCGUCAGCGCgGugCagccCGCggagCGGa -3' miRNA: 3'- -GCAGUCGCGgCugGa---GCGaaaaGCCc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 64778 | 0.66 | 0.919222 |
Target: 5'- --aCGGCGCCGaugGCCaauaUGCUUgUUCGGGc -3' miRNA: 3'- gcaGUCGCGGC---UGGa---GCGAA-AAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 48932 | 0.68 | 0.858948 |
Target: 5'- gGUCGGCGCaauuguaGAagcCCUCGCcca-CGGGg -3' miRNA: 3'- gCAGUCGCGg------CU---GGAGCGaaaaGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 113906 | 0.68 | 0.834991 |
Target: 5'- aGgCGGCGCCGcggguuCCUCGCUcg-CGGa -3' miRNA: 3'- gCaGUCGCGGCu-----GGAGCGAaaaGCCc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 66907 | 0.82 | 0.185846 |
Target: 5'- gCGUCAGgGCCGACCUUGCUUUUUa-- -3' miRNA: 3'- -GCAGUCgCGGCUGGAGCGAAAAGccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 19879 | 0.82 | 0.190556 |
Target: 5'- gCGUCGGCGCCGACCUCGCa------- -3' miRNA: 3'- -GCAGUCGCGGCUGGAGCGaaaagccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 124810 | 0.82 | 0.200291 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUa--- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 124932 | 0.82 | 0.200291 |
Target: 5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 66491 | 0.8 | 0.237822 |
Target: 5'- gCGUCGGCGCCGAUC-CGUUUUUCGa- -3' miRNA: 3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99601 | 0.78 | 0.318518 |
Target: 5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 99667 | 0.77 | 0.36439 |
Target: 5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3' miRNA: 3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 124870 | 0.71 | 0.684731 |
Target: 5'- gCGUCAuCGCCGACCcCGCUUUcCGa- -3' miRNA: 3'- -GCAGUcGCGGCUGGaGCGAAAaGCcc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 971 | 0.69 | 0.809375 |
Target: 5'- uCGUCGGCGUCGAUCggCGCagcagCGGc -3' miRNA: 3'- -GCAGUCGCGGCUGGa-GCGaaaa-GCCc -5' |
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21283 | 3' | -55.4 | NC_004778.3 | + | 83226 | 0.66 | 0.924758 |
Target: 5'- -uUCAGCGgCGGCCa-GCUgcaCGGGc -3' miRNA: 3'- gcAGUCGCgGCUGGagCGAaaaGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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