miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 21089 0.66 0.919222
Target:  5'- gCGUCAGCGCgGugCagccCGCggagCGGa -3'
miRNA:   3'- -GCAGUCGCGgCugGa---GCGaaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 64778 0.66 0.919222
Target:  5'- --aCGGCGCCGaugGCCaauaUGCUUgUUCGGGc -3'
miRNA:   3'- gcaGUCGCGGC---UGGa---GCGAA-AAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 48932 0.68 0.858948
Target:  5'- gGUCGGCGCaauuguaGAagcCCUCGCcca-CGGGg -3'
miRNA:   3'- gCAGUCGCGg------CU---GGAGCGaaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 113906 0.68 0.834991
Target:  5'- aGgCGGCGCCGcggguuCCUCGCUcg-CGGa -3'
miRNA:   3'- gCaGUCGCGGCu-----GGAGCGAaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 66907 0.82 0.185846
Target:  5'- gCGUCAGgGCCGACCUUGCUUUUUa-- -3'
miRNA:   3'- -GCAGUCgCGGCUGGAGCGAAAAGccc -5'
21283 3' -55.4 NC_004778.3 + 19879 0.82 0.190556
Target:  5'- gCGUCGGCGCCGACCUCGCa------- -3'
miRNA:   3'- -GCAGUCGCGGCUGGAGCGaaaagccc -5'
21283 3' -55.4 NC_004778.3 + 124810 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUa--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 124932 0.82 0.200291
Target:  5'- gCGUCAGCGCCGACCcCGCUUUUg--- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAgccc -5'
21283 3' -55.4 NC_004778.3 + 66491 0.8 0.237822
Target:  5'- gCGUCGGCGCCGAUC-CGUUUUUCGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99601 0.78 0.318518
Target:  5'- gGUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 99667 0.77 0.36439
Target:  5'- gGUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 124870 0.71 0.684731
Target:  5'- gCGUCAuCGCCGACCcCGCUUUcCGa- -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAaGCcc -5'
21283 3' -55.4 NC_004778.3 + 971 0.69 0.809375
Target:  5'- uCGUCGGCGUCGAUCggCGCagcagCGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGa-GCGaaaa-GCCc -5'
21283 3' -55.4 NC_004778.3 + 83226 0.66 0.924758
Target:  5'- -uUCAGCGgCGGCCa-GCUgcaCGGGc -3'
miRNA:   3'- gcAGUCGCgGCUGGagCGAaaaGCCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.