miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 3' -55.4 NC_004778.3 + 48932 0.68 0.858948
Target:  5'- gGUCGGCGCaauuguaGAagcCCUCGCcca-CGGGg -3'
miRNA:   3'- gCAGUCGCGg------CU---GGAGCGaaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66764 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 19890 0.68 0.854299
Target:  5'- gGUCGGCGCUGACgcaCgucuaaagauagcacUCGCUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG---G---------------AGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 95635 0.68 0.84317
Target:  5'- aCGcCGGUGCCGGCCaacgaaauuUCGgUcacgUCGGGg -3'
miRNA:   3'- -GCaGUCGCGGCUGG---------AGCgAaa--AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 113906 0.68 0.834991
Target:  5'- aGgCGGCGCCGcggguuCCUCGCUcg-CGGa -3'
miRNA:   3'- gCaGUCGCGGCu-----GGAGCGAaaaGCCc -5'
21283 3' -55.4 NC_004778.3 + 125349 0.68 0.818085
Target:  5'- ---gGGCGCCGACCUCGUgaa--GGu -3'
miRNA:   3'- gcagUCGCGGCUGGAGCGaaaagCCc -5'
21283 3' -55.4 NC_004778.3 + 971 0.69 0.809375
Target:  5'- uCGUCGGCGUCGAUCggCGCagcagCGGc -3'
miRNA:   3'- -GCAGUCGCGGCUGGa-GCGaaaa-GCCc -5'
21283 3' -55.4 NC_004778.3 + 44474 0.7 0.754038
Target:  5'- uCG-CGGCGCCGcuCgUCGCUgg-CGGGc -3'
miRNA:   3'- -GCaGUCGCGGCu-GgAGCGAaaaGCCC- -5'
21283 3' -55.4 NC_004778.3 + 84214 0.7 0.724796
Target:  5'- uGUCAaacGCGCUGACUaCGCUcgacUCGGGc -3'
miRNA:   3'- gCAGU---CGCGGCUGGaGCGAaa--AGCCC- -5'
21283 3' -55.4 NC_004778.3 + 44159 0.71 0.694835
Target:  5'- gGUCAGCcguuaaauacccGCCGGCCgCGCg--UUGGGc -3'
miRNA:   3'- gCAGUCG------------CGGCUGGaGCGaaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 124870 0.71 0.684731
Target:  5'- gCGUCAuCGCCGACCcCGCUUUcCGa- -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAaGCcc -5'
21283 3' -55.4 NC_004778.3 + 100073 0.72 0.654193
Target:  5'- gCGcCAGCGUCGACCcUGCUUUUUGa- -3'
miRNA:   3'- -GCaGUCGCGGCUGGaGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 49070 0.72 0.643967
Target:  5'- ----uGCGCCGACCUCGUguucgagUCGGa -3'
miRNA:   3'- gcaguCGCGGCUGGAGCGaaa----AGCCc -5'
21283 3' -55.4 NC_004778.3 + 100007 0.72 0.643967
Target:  5'- gCGUCAGCGUCGACCcUGCcUUUUGa- -3'
miRNA:   3'- -GCAGUCGCGGCUGGaGCGaAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 124953 0.73 0.56953
Target:  5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 125075 0.73 0.56953
Target:  5'- gGUCGGCGCUGACgcaugucugagguaCUCGUUUUUCGa- -3'
miRNA:   3'- gCAGUCGCGGCUG--------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 52984 0.74 0.49354
Target:  5'- -aUCAGCGCCGGCaUgGCg--UCGGGg -3'
miRNA:   3'- gcAGUCGCGGCUGgAgCGaaaAGCCC- -5'
21283 3' -55.4 NC_004778.3 + 66959 0.76 0.432302
Target:  5'- gGUCGGCGCCGACgcacguaagauagcaCUCGUUUUUCGc- -3'
miRNA:   3'- gCAGUCGCGGCUG---------------GAGCGAAAAGCcc -5'
21283 3' -55.4 NC_004778.3 + 99404 0.76 0.419887
Target:  5'- gCGUCAGCG-CGACCUCGCUUUa---- -3'
miRNA:   3'- -GCAGUCGCgGCUGGAGCGAAAagccc -5'
21283 3' -55.4 NC_004778.3 + 24556 0.76 0.411153
Target:  5'- gCGUCAaCGCCGACCgUGCUUUUCuGGu -3'
miRNA:   3'- -GCAGUcGCGGCUGGaGCGAAAAGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.