miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21284 3' -46.6 NC_004778.3 + 24192 0.75 0.889658
Target:  5'- aACGCUCGUACcaGAAAAGCGGGgucGGCg -3'
miRNA:   3'- -UGCGAGCAUGacCUUUUUGUUCa--CUG- -5'
21284 3' -46.6 NC_004778.3 + 24126 0.67 0.999505
Target:  5'- aACGCcCGUACUcGAAAcGCGAGgucGGCg -3'
miRNA:   3'- -UGCGaGCAUGAcCUUUuUGUUCa--CUG- -5'
21284 3' -46.6 NC_004778.3 + 24060 0.67 0.999042
Target:  5'- aACGCcCGUACUcGAAAAGCGcGGUcGGCg -3'
miRNA:   3'- -UGCGaGCAUGAcCUUUUUGU-UCA-CUG- -5'
21284 3' -46.6 NC_004778.3 + 23994 0.75 0.889658
Target:  5'- aACGCUCGUACcaGAAAAGCGGGgucGGCg -3'
miRNA:   3'- -UGCGAGCAUGacCUUUUUGUUCa--CUG- -5'
21284 3' -46.6 NC_004778.3 + 23929 0.66 0.999814
Target:  5'- aACGCcCGUACUcGAAAcGCGAGgcGGCg -3'
miRNA:   3'- -UGCGaGCAUGAcCUUUuUGUUCa-CUG- -5'
21284 3' -46.6 NC_004778.3 + 23863 0.67 0.999042
Target:  5'- aACGCcCGUACUcGAAAAGCGcGGUcGGCg -3'
miRNA:   3'- -UGCGaGCAUGAcCUUUUUGU-UCA-CUG- -5'
21284 3' -46.6 NC_004778.3 + 23797 0.75 0.889658
Target:  5'- aACGCUCGUACcaGAAAAGCGGGgucGGCg -3'
miRNA:   3'- -UGCGAGCAUGacCUUUUUGUUCa--CUG- -5'
21284 3' -46.6 NC_004778.3 + 20199 0.69 0.99413
Target:  5'- aACGCUCGUucccGAAAAGCGAGgucGGCg -3'
miRNA:   3'- -UGCGAGCAugacCUUUUUGUUCa--CUG- -5'
21284 3' -46.6 NC_004778.3 + 19940 1.02 0.053691
Target:  5'- aACGCUCGUACUGGAAAAACA-GUGACg -3'
miRNA:   3'- -UGCGAGCAUGACCUUUUUGUuCACUG- -5'
21284 3' -46.6 NC_004778.3 + 19912 0.78 0.794174
Target:  5'- aACGCUCGUGCccGAAAAGCGAGgucGGCg -3'
miRNA:   3'- -UGCGAGCAUGacCUUUUUGUUCa--CUG- -5'
21284 3' -46.6 NC_004778.3 + 14802 0.66 0.999857
Target:  5'- -aGUUUGuUGCUGGAAAAACGaucgauuggAGUGuACg -3'
miRNA:   3'- ugCGAGC-AUGACCUUUUUGU---------UCAC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.