miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21284 5' -56.7 NC_004778.3 + 62887 0.68 0.773011
Target:  5'- aGCGCC-AUgUCGCUUgccaagaCGGGCgACGUg -3'
miRNA:   3'- -CGCGGcUGgAGCGAAaa-----GCCCG-UGCA- -5'
21284 5' -56.7 NC_004778.3 + 122804 0.68 0.767368
Target:  5'- gGCGCUGACgcacguuuauagcaCUCGCUUUUCGagaaaagcgaggucGGCGCu- -3'
miRNA:   3'- -CGCGGCUG--------------GAGCGAAAAGC--------------CCGUGca -5'
21284 5' -56.7 NC_004778.3 + 9884 0.68 0.763583
Target:  5'- cGCGCCG-CCaaagUGCcgccCGGGCGCGg -3'
miRNA:   3'- -CGCGGCuGGa---GCGaaaaGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 107748 0.68 0.757869
Target:  5'- uGCGCUugGACCgcagcaccgcgucgCGCUcgUCGGGgGCGUc -3'
miRNA:   3'- -CGCGG--CUGGa-------------GCGAaaAGCCCgUGCA- -5'
21284 5' -56.7 NC_004778.3 + 66955 0.68 0.748259
Target:  5'- gGCGCCGACgcacguaagauagcaCUCGUUUUUCGcGUACa- -3'
miRNA:   3'- -CGCGGCUG---------------GAGCGAAAAGCcCGUGca -5'
21284 5' -56.7 NC_004778.3 + 84207 0.68 0.744386
Target:  5'- cGCGCUGACUaCGCUcgacUCGGGCcuGCa- -3'
miRNA:   3'- -CGCGGCUGGaGCGAaa--AGCCCG--UGca -5'
21284 5' -56.7 NC_004778.3 + 125348 0.68 0.744386
Target:  5'- gGCGCCGACCUCGUgaa--GGuCACc- -3'
miRNA:   3'- -CGCGGCUGGAGCGaaaagCCcGUGca -5'
21284 5' -56.7 NC_004778.3 + 99891 0.68 0.744386
Target:  5'- -aGCa---CUCGCUUUUCGGGUACa- -3'
miRNA:   3'- cgCGgcugGAGCGAAAAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 99825 0.68 0.744386
Target:  5'- -aGCa---CUCGCUUUUCGGGUACa- -3'
miRNA:   3'- cgCGgcugGAGCGAAAAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 49435 0.69 0.724796
Target:  5'- uGCGCCGccgacgcaGCCUCuuGCga---GGGCACGUu -3'
miRNA:   3'- -CGCGGC--------UGGAG--CGaaaagCCCGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 124815 0.69 0.724796
Target:  5'- aGCGCCGACCcCGCUUUUaa-GUACa- -3'
miRNA:   3'- -CGCGGCUGGaGCGAAAAgccCGUGca -5'
21284 5' -56.7 NC_004778.3 + 8648 0.69 0.714876
Target:  5'- cCGCCGACUacgaGCUUgugUUUGGGCACu- -3'
miRNA:   3'- cGCGGCUGGag--CGAA---AAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 110102 0.69 0.714876
Target:  5'- cGCGCCGACgUgcaaaugguugCGCaccucgUCGGGCACu- -3'
miRNA:   3'- -CGCGGCUGgA-----------GCGaaa---AGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 13758 0.69 0.704886
Target:  5'- cGCGgCGcUCUaCGCgguuugUUCGGGCGCGUu -3'
miRNA:   3'- -CGCgGCuGGA-GCGaa----AAGCCCGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 99738 0.69 0.684731
Target:  5'- aGCGCCGACCcUGCUUUUUGaGaACGUc -3'
miRNA:   3'- -CGCGGCUGGaGCGAAAAGCcCgUGCA- -5'
21284 5' -56.7 NC_004778.3 + 124937 0.7 0.667459
Target:  5'- aGCGCCGACCcCGCUUuugaguacagacgUucuccaaaagcggggUCGGGCgGCGa -3'
miRNA:   3'- -CGCGGCUGGaGCGAA-------------A---------------AGCCCG-UGCa -5'
21284 5' -56.7 NC_004778.3 + 4378 0.7 0.643967
Target:  5'- aCGCCGACCa-GCaucgUCGGGCAgCGg -3'
miRNA:   3'- cGCGGCUGGagCGaaa-AGCCCGU-GCa -5'
21284 5' -56.7 NC_004778.3 + 99743 0.7 0.623496
Target:  5'- gGCGCaUGuuuaaaaauaGCaCUCGCUUUUCGGGUACa- -3'
miRNA:   3'- -CGCG-GC----------UG-GAGCGAAAAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 99804 0.7 0.623496
Target:  5'- aGCGCCGACCcUGCUUUUUGagaacGUAUGUa -3'
miRNA:   3'- -CGCGGCUGGaGCGAAAAGCc----CGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 44142 0.7 0.623496
Target:  5'- cCGCCGGCCgCGCg--UUGGGCGgCGc -3'
miRNA:   3'- cGCGGCUGGaGCGaaaAGCCCGU-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.