Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21285 | 3' | -48.8 | NC_004778.3 | + | 124947 | 0.7 | 0.960735 |
Target: 5'- cGCUGACGCAUGUCUgA----GGUAc- -3' miRNA: 3'- -CGACUGCGUGCAGAgUuuaaCCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 125069 | 0.7 | 0.960735 |
Target: 5'- cGCUGACGCAUGUCUgA----GGUAc- -3' miRNA: 3'- -CGACUGCGUGCAGAgUuuaaCCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 90239 | 0.7 | 0.952597 |
Target: 5'- cGCUGACGCACGUgCaCAAAUcuuGCAUg -3' miRNA: 3'- -CGACUGCGUGCA-GaGUUUAac-CGUAa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 122754 | 0.71 | 0.943395 |
Target: 5'- cGCUGACGCACGUCUaua----GCAc- -3' miRNA: 3'- -CGACUGCGUGCAGAguuuaacCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 122692 | 0.71 | 0.943395 |
Target: 5'- cGCUGACGCACGUCUaua----GCAc- -3' miRNA: 3'- -CGACUGCGUGCAGAguuuaacCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 8730 | 0.71 | 0.9211 |
Target: 5'- -aUGGCGCACGUUggcguugUCAAAUUGGUc-- -3' miRNA: 3'- cgACUGCGUGCAG-------AGUUUAACCGuaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 18850 | 0.72 | 0.915583 |
Target: 5'- cGCUGACGUACGaCg-GAGUUGGCu-- -3' miRNA: 3'- -CGACUGCGUGCaGagUUUAACCGuaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 19884 | 0.72 | 0.892738 |
Target: 5'- cGCUGACGCACGUCUaaagauaGCAc- -3' miRNA: 3'- -CGACUGCGUGCAGAguuuaacCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 66693 | 0.72 | 0.892738 |
Target: 5'- cGCUGACGCACGUCUaaagauaGCAc- -3' miRNA: 3'- -CGACUGCGUGCAGAguuuaacCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 66758 | 0.72 | 0.892738 |
Target: 5'- cGCUGACGCACGUCUaaagauaGCAc- -3' miRNA: 3'- -CGACUGCGUGCAGAguuuaacCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 122446 | 0.72 | 0.892738 |
Target: 5'- cGCUGACGCACGUCUaaagauaGCAc- -3' miRNA: 3'- -CGACUGCGUGCAGAguuuaacCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 122793 | 0.74 | 0.821863 |
Target: 5'- cGCUGACGCAUGUC------UGGCAUUu -3' miRNA: 3'- -CGACUGCGUGCAGaguuuaACCGUAA- -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 24220 | 0.84 | 0.319863 |
Target: 5'- cGCUGACGCAUGUCUCAAAUUaGUAc- -3' miRNA: 3'- -CGACUGCGUGCAGAGUUUAAcCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 24022 | 0.84 | 0.319863 |
Target: 5'- cGCUGACGCAUGUCUCAAAUUaGUAc- -3' miRNA: 3'- -CGACUGCGUGCAGAGUUUAAcCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 23825 | 0.84 | 0.319863 |
Target: 5'- cGCUGACGCAUGUCUCAAAUUaGUAc- -3' miRNA: 3'- -CGACUGCGUGCAGAGUUUAAcCGUaa -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 24287 | 1.08 | 0.011841 |
Target: 5'- cGCUGACGCACGUCUCAAAUUGGCAUUc -3' miRNA: 3'- -CGACUGCGUGCAGAGUUUAACCGUAA- -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 24088 | 1.08 | 0.011841 |
Target: 5'- cGCUGACGCACGUCUCAAAUUGGCAUUc -3' miRNA: 3'- -CGACUGCGUGCAGAGUUUAACCGUAA- -5' |
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21285 | 3' | -48.8 | NC_004778.3 | + | 23891 | 1.08 | 0.011841 |
Target: 5'- cGCUGACGCACGUCUCAAAUUGGCAUUc -3' miRNA: 3'- -CGACUGCGUGCAGAGUUUAACCGUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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