miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21285 5' -52.5 NC_004778.3 + 24123 1.11 0.004883
Target:  5'- gAGAACGCCCGUACUCGAAACGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 24322 1.11 0.004883
Target:  5'- gAGAACGCCCGUACUCGAAACGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 23926 1.1 0.005167
Target:  5'- gAGAACGCCCGUACUCGAAACGCGAGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUGCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 66593 0.94 0.056004
Target:  5'- gAGAACGCUCGUACUCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 23860 0.93 0.067869
Target:  5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5'
21285 5' -52.5 NC_004778.3 + 24057 0.93 0.067869
Target:  5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5'
21285 5' -52.5 NC_004778.3 + 24255 0.92 0.075701
Target:  5'- gAGAACGCCCGUACUCGAAaaaGCGCGGucGGc -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUU---UGCGCU--CC- -5'
21285 5' -52.5 NC_004778.3 + 99347 0.85 0.206367
Target:  5'- gAGAACGCUCGUGCcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 99237 0.79 0.426796
Target:  5'- gAGAACGCUCGUAUUUGuaaaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCuuugCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 122833 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 19849 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 122723 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 66722 0.77 0.522352
Target:  5'- -aGACGCUCGUGCcCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGCGGGCAUGaGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 125099 0.76 0.552671
Target:  5'- gAGAACGUCUGUACUCaAAA-GCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGcUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 19913 0.76 0.573176
Target:  5'- -uAACGCUCGUGCcCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGCGGGCAUGaGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 99851 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 99917 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 66712 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 66646 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 19837 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.