miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21286 3' -48.8 NC_004778.3 + 7565 0.66 0.997249
Target:  5'- uGCUGGCGUugcagaacACGUCUCGAuccacgucgGGCc-- -3'
miRNA:   3'- -CGACUGCG--------UGCAGAGUUuaa------CCGuaa -5'
21286 3' -48.8 NC_004778.3 + 20105 0.66 0.996123
Target:  5'- cGCUGACGCACGUCaCuuGUUuuuccaguacGaGCGUUc -3'
miRNA:   3'- -CGACUGCGUGCAGaGuuUAA----------C-CGUAA- -5'
21286 3' -48.8 NC_004778.3 + 111105 0.66 0.995433
Target:  5'- uGUUGGCGUccaGCGUUUCAAAauaGGCGg- -3'
miRNA:   3'- -CGACUGCG---UGCAGAGUUUaa-CCGUaa -5'
21286 3' -48.8 NC_004778.3 + 66890 0.67 0.994645
Target:  5'- cGCcGACGCACGUC-CAAAgauaGCAc- -3'
miRNA:   3'- -CGaCUGCGUGCAGaGUUUaac-CGUaa -5'
21286 3' -48.8 NC_004778.3 + 20171 0.67 0.994645
Target:  5'- cGCcGACGCACGUC-CAAAgauaGCAc- -3'
miRNA:   3'- -CGaCUGCGUGCAGaGUUUaac-CGUaa -5'
21286 3' -48.8 NC_004778.3 + 66824 0.67 0.994645
Target:  5'- cGCcGACGCACGUC-CAAAgauaGCAc- -3'
miRNA:   3'- -CGaCUGCGUGCAGaGUUUaac-CGUaa -5'
21286 3' -48.8 NC_004778.3 + 33771 0.67 0.993751
Target:  5'- aCUGGCGCAgGUCgag---UGGCAg- -3'
miRNA:   3'- cGACUGCGUgCAGaguuuaACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 125005 0.67 0.99274
Target:  5'- -aUGACGCAUGUCUgA----GGCAUUc -3'
miRNA:   3'- cgACUGCGUGCAGAgUuuaaCCGUAA- -5'
21286 3' -48.8 NC_004778.3 + 102808 0.67 0.992413
Target:  5'- aGCUGaACGCAUGUCcCAAcauaaacgaccauaGuUUGGCGUUa -3'
miRNA:   3'- -CGAC-UGCGUGCAGaGUU--------------U-AACCGUAA- -5'
21286 3' -48.8 NC_004778.3 + 19949 0.67 0.990331
Target:  5'- cGCUGACGCACGUUaaAGAUa-GCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGagUUUAacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 99936 0.67 0.989781
Target:  5'- cGCUGGCGCAUGUCUaaaaauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 22781 0.68 0.987168
Target:  5'- -aUGGCGCGCGUaccaaCUCGGcgaacccAUUGGCAa- -3'
miRNA:   3'- cgACUGCGUGCA-----GAGUU-------UAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 99607 0.68 0.985773
Target:  5'- cGCUGACGCACGUCUaaAAAUaacacucgcuuuucgGGUAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAg-UUUAa--------------CCGUaa -5'
21286 3' -48.8 NC_004778.3 + 103390 0.69 0.979252
Target:  5'- cGCUGGCGCccuCGUCgugu-UUGGCGg- -3'
miRNA:   3'- -CGACUGCGu--GCAGaguuuAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 124088 0.69 0.979252
Target:  5'- cGCUGAUGCGCG-Cg---GUUGGCGg- -3'
miRNA:   3'- -CGACUGCGUGCaGaguuUAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 24154 0.69 0.978271
Target:  5'- cGCUGACGCAUGUCUaaaaauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 23956 0.69 0.978271
Target:  5'- cGCUGACGCAUGUCUaaaaauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 51192 0.69 0.976736
Target:  5'- -aUGGCGCccaaACGUaUCGAGUUGGCGg- -3'
miRNA:   3'- cgACUGCG----UGCAgAGUUUAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 96451 0.69 0.974004
Target:  5'- cGCUGuCGCAgcucUUUCAGGUUGGCAa- -3'
miRNA:   3'- -CGACuGCGUgc--AGAGUUUAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 72527 0.69 0.967853
Target:  5'- gGCUGauugacuuguuGCGCGCGUC-CAAGUcGGCGc- -3'
miRNA:   3'- -CGAC-----------UGCGUGCAGaGUUUAaCCGUaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.