miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21286 3' -48.8 NC_004778.3 + 66824 0.67 0.994645
Target:  5'- cGCcGACGCACGUC-CAAAgauaGCAc- -3'
miRNA:   3'- -CGaCUGCGUGCAGaGUUUaac-CGUaa -5'
21286 3' -48.8 NC_004778.3 + 66890 0.67 0.994645
Target:  5'- cGCcGACGCACGUC-CAAAgauaGCAc- -3'
miRNA:   3'- -CGaCUGCGUGCAGaGUUUaac-CGUaa -5'
21286 3' -48.8 NC_004778.3 + 72527 0.69 0.967853
Target:  5'- gGCUGauugacuuguuGCGCGCGUC-CAAGUcGGCGc- -3'
miRNA:   3'- -CGAC-----------UGCGUGCAGaGUUUAaCCGUaa -5'
21286 3' -48.8 NC_004778.3 + 90239 0.7 0.952597
Target:  5'- cGCUGACGCACGUgCaCAAAUcuuGCAUg -3'
miRNA:   3'- -CGACUGCGUGCA-GaGUUUAac-CGUAa -5'
21286 3' -48.8 NC_004778.3 + 96451 0.69 0.974004
Target:  5'- cGCUGuCGCAgcucUUUCAGGUUGGCAa- -3'
miRNA:   3'- -CGACuGCGUgc--AGAGUUUAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 99607 0.68 0.985773
Target:  5'- cGCUGACGCACGUCUaaAAAUaacacucgcuuuucgGGUAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAg-UUUAa--------------CCGUaa -5'
21286 3' -48.8 NC_004778.3 + 99936 0.67 0.989781
Target:  5'- cGCUGGCGCAUGUCUaaaaauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 102808 0.67 0.992413
Target:  5'- aGCUGaACGCAUGUCcCAAcauaaacgaccauaGuUUGGCGUUa -3'
miRNA:   3'- -CGAC-UGCGUGCAGaGUU--------------U-AACCGUAA- -5'
21286 3' -48.8 NC_004778.3 + 103390 0.69 0.979252
Target:  5'- cGCUGGCGCccuCGUCgugu-UUGGCGg- -3'
miRNA:   3'- -CGACUGCGu--GCAGaguuuAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 111105 0.66 0.995433
Target:  5'- uGUUGGCGUccaGCGUUUCAAAauaGGCGg- -3'
miRNA:   3'- -CGACUGCG---UGCAGAGUUUaa-CCGUaa -5'
21286 3' -48.8 NC_004778.3 + 122446 0.72 0.892738
Target:  5'- cGCUGACGCACGUCUaaagauaGCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 122692 0.71 0.943395
Target:  5'- cGCUGACGCACGUCUaua----GCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 122754 0.71 0.943395
Target:  5'- cGCUGACGCACGUCUaua----GCAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAguuuaacCGUaa -5'
21286 3' -48.8 NC_004778.3 + 122793 0.74 0.821863
Target:  5'- cGCUGACGCAUGUC------UGGCAUUu -3'
miRNA:   3'- -CGACUGCGUGCAGaguuuaACCGUAA- -5'
21286 3' -48.8 NC_004778.3 + 124088 0.69 0.979252
Target:  5'- cGCUGAUGCGCG-Cg---GUUGGCGg- -3'
miRNA:   3'- -CGACUGCGUGCaGaguuUAACCGUaa -5'
21286 3' -48.8 NC_004778.3 + 124947 0.7 0.960735
Target:  5'- cGCUGACGCAUGUCUgA----GGUAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAgUuuaaCCGUaa -5'
21286 3' -48.8 NC_004778.3 + 125005 0.67 0.99274
Target:  5'- -aUGACGCAUGUCUgA----GGCAUUc -3'
miRNA:   3'- cgACUGCGUGCAGAgUuuaaCCGUAA- -5'
21286 3' -48.8 NC_004778.3 + 125069 0.7 0.960735
Target:  5'- cGCUGACGCAUGUCUgA----GGUAc- -3'
miRNA:   3'- -CGACUGCGUGCAGAgUuuaaCCGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.