Results 21 - 40 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 24057 | 0.93 | 0.067869 |
Target: 5'- gAGAACGCCCGUACUCGAAaaGCGCGGucGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUU--UGCGCU--CC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 24255 | 0.92 | 0.075701 |
Target: 5'- gAGAACGCCCGUACUCGAAaaaGCGCGGucGGc -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUU---UGCGCU--CC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 99347 | 0.85 | 0.206367 |
Target: 5'- gAGAACGCUCGUGCcCGAAAaGCGAGGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 99237 | 0.79 | 0.426796 |
Target: 5'- gAGAACGCUCGUAUUUGuaaaGCGAGGu -3' miRNA: 3'- -UCUUGCGGGCAUGAGCuuugCGCUCC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 99301 | 0.72 | 0.795737 |
Target: 5'- gAGAACGCUCGUGCcCuAAAaGCGGGGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGcUUUgCGCUCC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 122880 | 0.72 | 0.7675 |
Target: 5'- gAGAACaUCUGUACUUGGAAaGCGGGGu -3' miRNA: 3'- -UCUUGcGGGCAUGAGCUUUgCGCUCC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 19937 | 0.73 | 0.748034 |
Target: 5'- gAGAACGCUCGUACUgGAAAaacaGUGAc- -3' miRNA: 3'- -UCUUGCGGGCAUGAgCUUUg---CGCUcc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 66712 | 0.76 | 0.60424 |
Target: 5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 66646 | 0.76 | 0.60424 |
Target: 5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 19837 | 0.76 | 0.60424 |
Target: 5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 99719 | 0.69 | 0.899341 |
Target: 5'- gAGAACGUCUGUACcCGAAAaaCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 111766 | 0.68 | 0.948348 |
Target: 5'- -aAACGCCCauugcGUACUCGgcGCGCGu-- -3' miRNA: 3'- ucUUGCGGG-----CAUGAGCuuUGCGCucc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 70379 | 0.67 | 0.956546 |
Target: 5'- -uGACGCCCGUGCUguccGGCGCuuGGg -3' miRNA: 3'- ucUUGCGGGCAUGAgcu-UUGCGcuCC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 20200 | 0.67 | 0.956546 |
Target: 5'- -uAACGCUCGUuCcCGAAAaGCGAGGu -3' miRNA: 3'- ucUUGCGGGCAuGaGCUUUgCGCUCC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 27962 | 0.67 | 0.967104 |
Target: 5'- cGAGCgcgacaagcgGCCCGUGCaugCGGugcAGCGCGGGc -3' miRNA: 3'- uCUUG----------CGGGCAUGa--GCU---UUGCGCUCc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 36756 | 0.66 | 0.973044 |
Target: 5'- cAGAaugACGCCCG-ACUCGAAcgGCaccguGUGAGa -3' miRNA: 3'- -UCU---UGCGGGCaUGAGCUU--UG-----CGCUCc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 51358 | 0.66 | 0.978167 |
Target: 5'- aAGGACuuGCCCGccaACUCGAuACGUuuGGg -3' miRNA: 3'- -UCUUG--CGGGCa--UGAGCUuUGCGcuCC- -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 36242 | 0.66 | 0.978167 |
Target: 5'- uGAACGCUCG-GCUCuu-GCGCGAu- -3' miRNA: 3'- uCUUGCGGGCaUGAGcuuUGCGCUcc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 99785 | 0.66 | 0.98044 |
Target: 5'- gAGAACGUauGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5' |
|||||||
21286 | 5' | -52.5 | NC_004778.3 | + | 66593 | 0.94 | 0.056004 |
Target: 5'- gAGAACGCUCGUACUCGAAAaGCGAGGu -3' miRNA: 3'- -UCUUGCGGGCAUGAGCUUUgCGCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home