miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21286 5' -52.5 NC_004778.3 + 99851 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21286 5' -52.5 NC_004778.3 + 94875 0.72 0.77705
Target:  5'- -aGACGCCCGUGCUgGGAuUGC-AGGa -3'
miRNA:   3'- ucUUGCGGGCAUGAgCUUuGCGcUCC- -5'
21286 5' -52.5 NC_004778.3 + 122661 0.7 0.878622
Target:  5'- gAGAACaCCCGUuCcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAuGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 122723 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 124977 0.73 0.738138
Target:  5'- cGGAACGUCUGUACUUaAAA-GCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGcUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 116008 0.7 0.878622
Target:  5'- gGGggUGCCUG-GCUUGAuguacauGCGCGAGu -3'
miRNA:   3'- -UCuuGCGGGCaUGAGCUu------UGCGCUCc -5'
21286 5' -52.5 NC_004778.3 + 19849 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 105673 0.7 0.89267
Target:  5'- cGAACGUgagcuuuuuaCUGUACUCGGAauGCGCGAc- -3'
miRNA:   3'- uCUUGCG----------GGCAUGAGCUU--UGCGCUcc -5'
21286 5' -52.5 NC_004778.3 + 42669 0.69 0.899341
Target:  5'- uGAGCaGCCCGUugUCGGGcACGcCGAc- -3'
miRNA:   3'- uCUUG-CGGGCAugAGCUU-UGC-GCUcc -5'
21286 5' -52.5 NC_004778.3 + 122833 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 95908 0.71 0.855855
Target:  5'- cGGAuaGCGCCCGgcgcgGCUCcaaaucuuGAugGCGGGGc -3'
miRNA:   3'- -UCU--UGCGGGCa----UGAGc-------UUugCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 66841 0.71 0.839616
Target:  5'- aAGAACGUauGUACcCGAAAaGCGAGGc -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 99301 0.72 0.795737
Target:  5'- gAGAACGCUCGUGCcCuAAAaGCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGcUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 122880 0.72 0.7675
Target:  5'- gAGAACaUCUGUACUUGGAAaGCGGGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGAGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 34429 0.66 0.982532
Target:  5'- cGGcgUGCCCGUACUgcuguacaCGGGcacgcugcGCGuCGAGGa -3'
miRNA:   3'- -UCuuGCGGGCAUGA--------GCUU--------UGC-GCUCC- -5'
21286 5' -52.5 NC_004778.3 + 99347 0.85 0.206367
Target:  5'- gAGAACGCUCGUGCcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 21273 0.67 0.96381
Target:  5'- cAGAugGCCCGUGaugCGca--GCGAGu -3'
miRNA:   3'- -UCUugCGGGCAUga-GCuuugCGCUCc -5'
21286 5' -52.5 NC_004778.3 + 99410 0.66 0.973044
Target:  5'- ---uCGUC-GUACUCGGAAaGCGAGGu -3'
miRNA:   3'- ucuuGCGGgCAUGAGCUUUgCGCUCC- -5'
21286 5' -52.5 NC_004778.3 + 74833 0.66 0.975704
Target:  5'- --uGCGCCCGUAgUCGGuGGCGcCGAu- -3'
miRNA:   3'- ucuUGCGGGCAUgAGCU-UUGC-GCUcc -5'
21286 5' -52.5 NC_004778.3 + 122819 0.66 0.98044
Target:  5'- cGAACaUCUGUACUUGGAAaGCGGGa -3'
miRNA:   3'- uCUUGcGGGCAUGAGCUUUgCGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.